HL_6HA1_029

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6HA1|1|A|A|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_029 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2781

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6HA1|1|A|C|1110
6HA1|1|A|U|1111
6HA1|1|A|U|1112
6HA1|1|A|A|1113
6HA1|1|A|G|1114
6HA1|1|A|A|1115
6HA1|1|A|A|1116
6HA1|1|A|G|1117
6HA1|1|A|C|1118
6HA1|1|A|A|1119
6HA1|1|A|G|1120

Current chains

Chain A

23S ribosomal RNA

Nearby chains