6HA1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6HA1_107 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_6HA1_001 | 1/A/67:74 | No text annotation | geometric HL_4WF9_001 HL_86769.4 | |
| HL_6HA1_002 | 1/A/87:95 | Pseudoknot geometry | homologous HL_4WF9_002 HL_77600.2 | |
| HL_6HA1_003 | 1/A/122:127 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_6HA1_004 | 1/A/136:143 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_81538.2 | |
| HL_6HA1_005 | 1/A/159:169 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_6HA1_006 | 1/A/197:204 | No text annotation | homologous HL_5J7L_139 HL_30068.2 | |
| HL_6HA1_007 | 1/A/228:233 | No text annotation | homologous HL_4WF9_007 HL_53890.2 | |
| HL_6HA1_008 | 1/A/249:255 | No text annotation | homologous HL_7A0S_008 HL_37369.2 | |
| HL_6HA1_111 | 1/A/284:287 | No text annotation | ||
| HL_6HA1_010 | 1/A/349:356 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_01609.3 | |
| HL_6HA1_011 | 1/A/363:367 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_6HA1_012 | 1/A/371:379 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_6HA1_013 | 1/A/429:439 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_6HA1_014 | 1/A/457:464 | Pseudoknot geometry | homologous HL_4WF9_014 HL_30680.3 | |
| HL_6HA1_015 | 1/A/509:514 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
| HL_6HA1_016 | 1/A/534:539 | GNRA | homologous HL_7RQB_016 NA | |
| HL_6HA1_017 | 1/A/588:595 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
| HL_6HA1_018 | 1/A/610:619 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_018 HL_28252.7 | |
| HL_6HA1_019 | 1/A/656:662 | GNRA | geometric HL_5J7L_026 HL_93535.1 | |
| HL_6HA1_020 | 1/A/675:680 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_6HA1_021 | 1/A/687:693 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_6HA1_022 | 1/A/759:766 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_6HA1_023 | 1/A/791:800 | No text annotation | homologous HL_7A0S_022 HL_88205.2 | |
| HL_6HA1_024 | 1/A/826:832 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_6HA1_025 | 1/A/873:878 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_6HA1_026 | 1/A/932:938 | No text annotation | ||
| HL_6HA1_027 | 1/A/1001:1008 | GNRA | homologous HL_7RQB_027 NA | |
| HL_6HA1_028 | 1/A/1024:1031 | No text annotation | homologous HL_7A0S_027 HL_42998.2 | |
| HL_6HA1_029 | 1/A/1110:1120 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6HA1_030 | 1/A/1138:1145 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_6HA1_031 | 1/A/1262:1267 | GNRA | homologous HL_7A0S_031 HL_37824.7 | |
| HL_6HA1_032 | 1/A/1320:1328 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_28252.7 | |
| HL_6HA1_033 | 1/A/1363:1369 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_57176.2 | |
| HL_6HA1_034 | 1/A/1402:1407 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_6HA1_035 | 1/A/1428:1437 | No text annotation | homologous HL_4WF9_035 HL_81545.2 | |
| HL_6HA1_036 | 1/A/1497:1508 | No text annotation | ||
| HL_6HA1_037 | 1/A/1538:1544 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_6HA1_038 | 1/A/1613:1616 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_6HA1_039 | 1/A/1657:1664 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6HA1_040 | 1/A/1675:1681 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_6HA1_041 | 1/A/1736:1741 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_6HA1_042 | 1/A/1764:1769 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_6HA1_043 | 1/A/1781:1785 | No text annotation | homologous HL_7A0S_044 HL_80709.3 | |
| HL_6HA1_044 | 1/A/1806:1816 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_6HA1_045 | 1/A/1835:1840 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6HA1_046 | 1/A/1897:1902 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_6HA1_047 | 1/A/1939:1949 | No text annotation | ||
| HL_6HA1_048 | 1/A/1978:1986 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_6HA1_049 | 1/A/2056:2065 | No text annotation | homologous HL_4WF9_047 HL_61996.2 | |
| HL_6HA1_050 | 1/A/2172:2177 | No text annotation | homologous HL_5J7L_184 NA | |
| HL_6HA1_051 | 1/A/2238:2244 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_6HA1_052 | 1/A/2277:2285 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_6HA1_053 | 1/A/2293:2305 | No text annotation | homologous HL_4WF9_050 HL_91939.2 | |
| HL_6HA1_108 | 1/A/2333:2341 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_6HA1_055 | 1/A/2353:2360 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_6HA1_056 | 1/A/2384:2391 | GNRA with extra cWW | homologous HL_4WF9_053 HL_04259.3 | |
| HL_6HA1_057 | 1/A/2403:2408 | GNRA | homologous HL_7RQB_058 NA | |
| HL_6HA1_058 | 1/A/2433:2442 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
| HL_6HA1_059 | 1/A/2500:2508 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_6HA1_060 | 1/A/2557:2564 | No text annotation | homologous HL_5J7L_194 HL_31585.3 | |
| HL_6HA1_061 | 1/A/2580:2586 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_6HA1_062 | 1/A/2623:2628 | GNRA | homologous HL_7A0S_062 HL_37824.7 | |
| HL_6HA1_063 | 1/A/2687:2692 | GNRA | homologous HL_7RQB_064 NA | |
| HL_6HA1_064 | 1/A/2730:2735 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_6HA1_065 | 1/A/2774:2788 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_6HA1_066 | 1/A/2823:2828 | GNRA | geometric HL_5FQ5_001 HL_37824.7 | |
| HL_6HA1_067 | 1/A/2844:2852 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_6HA1_068 | 1/A/2881:2886 | GNRA | homologous HL_7RQB_069 NA | |
| HL_6HA1_109 | 1/B/32:46 | No text annotation | homologous HL_4V9F_074 HL_97756.2 | |
| HL_6HA1_069 | 1/B/36:42 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6HA1_070 | 1/B/84:88 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_6HA1_071 | 1/a/14:24 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_6HA1_072 | 1/a/83:86 | No text annotation | ||
| HL_6HA1_073 | 1/a/157:162 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_6HA1_074 | 1/a/192:197 | No text annotation | ||
| HL_6HA1_075 | 1/a/217:222 | UNCG | homologous HL_5J7L_005 HL_34617.5 | |
| HL_6HA1_076 | 1/a/267:275 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_6HA1_077 | 1/a/304:309 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_6HA1_078 | 1/a/328:341 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_6HA1_079 | 1/a/350:355 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_6HA1_080 | 1/a/387:392 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_6HA1_081 | 1/a/427:432 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_6HA1_082 | 1/a/472:478 | GNRA | geometric HL_3DIL_003 HL_30068.2 | |
| HL_6HA1_083 | 1/a/531:536 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6HA1_084 | 1/a/626:632 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_6HA1_085 | 1/a/698:707 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_6HA1_086 | 1/a/735:740 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_6HA1_087 | 1/a/795:805 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_6HA1_112 | 1/a/850:855 | GNRA | geometric HL_1M5K_003 HL_37824.7 | |
| HL_6HA1_089 | 1/a/872:877 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_6HA1_090 | 1/a/907:912 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_6HA1_091 | 1/a/973:982 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_6HA1_092 | 1/a/1022:1027 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_6HA1_093 | 1/a/1038:1043 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6HA1_094 | 1/a/1086:1091 | GNRA | homologous HL_4LFB_024 HL_37824.7 | |
| HL_6HA1_095 | 1/a/1099:1106 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_6HA1_096 | 1/a/1143:1150 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_6HA1_097 | 1/a/1174:1180 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_6HA1_098 | 1/a/1274:1279 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_6HA1_099 | 1/a/1323:1332 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_6HA1_100 | 1/a/1365:1375 | No text annotation | homologous HL_5J7L_029 HL_06226.4 | |
| HL_6HA1_101 | 1/a/1459:1463 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_6HA1_102 | 1/a/1525:1530 | GNRA | homologous HL_6CZR_103 NA | |
| HL_6HA1_103 | 1/x/12:24 | No text annotation | homologous HL_1SER_001 NA | |
| HL_6HA1_104 | 1/x/32:40 | tRNA anticodon loop | homologous HL_6UFM_002 HL_06059.5 | |
| HL_6HA1_110 | 1/x/47:56 | No text annotation | homologous HL_4WSM_251 HL_75293.5 | |
| HL_6HA1_105 | 1/x/49:55 | No text annotation | homologous HL_4WSM_210 HL_59735.5 | |
| HL_6HA1_106 | 1/x/64:72 | T-loop with 2 stacked bulged bases | homologous HL_4YYE_003 HL_28252.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6HA1_009 | No text annotation | ||
| HL_6HA1_054 | No text annotation | ||
| HL_6HA1_088 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6HA1_001 | 1/A/24:30, 1/A/556:562 | Triple sheared with non-canonical cWW | geometric IL_4WF9_001 IL_04021.2 | |
| IL_6HA1_002 | 1/A/36:37, 1/A/489:491 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6HA1_003 | 1/A/43:44, 1/A/481:483 | Minor groove platform | homologous IL_5J7L_247 IL_51454.2 | |
| IL_6HA1_004 | 1/A/81:85, 1/A/97:104 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_6HA1_005 | 1/A/152:153, 1/A/175:177 | Single bulged A | homologous IL_4WF9_006 IL_31462.5 | |
| IL_6HA1_006 | 1/A/186:187, 1/A/215:217 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
| IL_6HA1_007 | 1/A/191:197, 1/A/204:211 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 IL_04346.10 | |
| IL_6HA1_008 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_04346.10 | |
| IL_6HA1_009 | 1/A/305:306, 1/A/410:413 | Major groove minor groove platform; mini C-loop | geometric IL_7A0S_068 IL_68140.4 | |
| IL_6HA1_010 | 1/A/336:338, 1/A/387:391 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_6HA1_011 | 1/A/344:346, 1/A/359:360 | Single bulged A | geometric IL_7A0S_012 IL_31462.5 | |
| IL_6HA1_012 | 1/A/528:531, 1/A/542:555 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_6HA1_013 | 1/A/582:585, 1/A/598:601 | Double sheared | homologous IL_4WF9_016 IL_09705.15 | |
| IL_6HA1_014 | 1/A/608:610, 1/A/619:621 | Isolated non-canonical cWW pair | geometric IL_1ZH5_001 IL_87907.2 | |
| IL_6HA1_015 | 1/A/639:641, 1/A/707:709 | Isolated non-canonical cWW pair | homologous IL_4WF9_018 IL_07785.1 | |
| IL_6HA1_016 | 1/A/650:654, 1/A/664:668 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_6HA1_017 | 1/A/719:721, 1/A/853:855 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_87907.2 | |
| IL_6HA1_018 | 1/A/721:725, 1/A/846:853 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_6HA1_019 | 1/A/749:750, 1/A/775:777 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_6HA1_020 | 1/A/750:754, 1/A/771:775 | Triple sheared | geometric IL_5J7L_263 IL_50730.2 | |
| IL_6HA1_021 | 1/A/785:787, 1/A/804:805 | Major groove platform | homologous IL_4WF9_026 IL_48076.6 | |
| IL_6HA1_022 | 1/A/822:824, 1/A/834:838 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_6HA1_023 | 1/A/884:885, 1/A/986:988 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_6HA1_183 | 1/A/891:895, 1/A/977:980 | No text annotation | homologous IL_4WF9_029 IL_06300.1 | |
| IL_6HA1_025 | 1/A/899:900, 1/A/971:973 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6HA1_026 | 1/A/903:909, 1/A/962:968 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4WF9_031 IL_29198.2 | |
| IL_6HA1_027 | 1/A/909:910, 1/A/960:962 | Minor groove platform | homologous IL_4WF9_032 IL_51454.2 | |
| IL_6HA1_028 | 1/A/911:915, 1/A/956:959 | C-loop | homologous IL_7RQB_029 NA | |
| IL_6HA1_029 | 1/A/922:926, 1/A/945:949 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_6HA1_195 | 1/A/927:928, 1/A/942:944 | Single bulged A | geometric IL_8P9A_441 IL_31462.5 | |
| IL_6HA1_031 | 1/A/998:1000, 1/A/1009:1011 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_87907.2 | |
| IL_6HA1_032 | 1/A/1040:1042, 1/A/1205:1206 | Single bulged C | homologous IL_4WF9_035 IL_61258.15 | |
| IL_6HA1_033 | 1/A/1044:1048, 1/A/1199:1203 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_6HA1_034 | 1/A/1050:1057, 1/A/1196:1197 | SSU/LSU pseudoknot | homologous IL_5J7L_278 IL_41203.4 | |
| IL_6HA1_035 | 1/A/1057:1059, 1/A/1195:1196 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_6HA1_036 | 1/A/1064:1070, 1/A/1186:1190 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_6HA1_037 | 1/A/1070:1076, 1/A/1170:1186 | No text annotation | geometric IL_4WF9_040 IL_50715.3 | |
| IL_6HA1_038 | 1/A/1077:1080, 1/A/1167:1169 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_57744.1 | |
| IL_6HA1_039 | 1/A/1089:1097, 1/A/1154:1158 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_6HA1_040 | 1/A/1105:1109, 1/A/1122:1125 | No text annotation | ||
| IL_6HA1_041 | 1/A/1109:1110, 1/A/1120:1122 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6HA1_042 | 1/A/1237:1239, 1/A/1287:1290 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.3 | |
| IL_6HA1_043 | 1/A/1243:1247, 1/A/1279:1283 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6HA1_044 | 1/A/1248:1255, 1/A/1274:1278 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6HA1_045 | 1/A/1259:1261, 1/A/1268:1270 | Intercalated cWW | homologous IL_4WF9_047 IL_31737.3 | |
| IL_6HA1_046 | 1/A/1302:1309, 1/A/2040:2046 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_048 IL_04346.10 | |
| IL_6HA1_047 | 1/A/1349:1352, 1/A/1648:1649 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6HA1_048 | 1/A/1358:1362, 1/A/1370:1372 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_83150.2 | |
| IL_6HA1_049 | 1/A/1390:1394, 1/A/1415:1419 | UAA/GAN | homologous IL_7A0S_048 IL_89021.2 | |
| IL_6HA1_050 | 1/A/1396:1400, 1/A/1409:1413 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_6HA1_051 | 1/A/1448:1450, 1/A/1637:1638 | Minor groove platform | geometric IL_4V9F_034 IL_51454.2 | |
| IL_6HA1_052 | 1/A/1455:1462, 1/A/1629:1632 | No text annotation | ||
| IL_6HA1_053 | 1/A/1463:1467, 1/A/1625:1628 | Other IL | homologous IL_4WF9_054 IL_99646.2 | |
| IL_6HA1_054 | 1/A/1478:1481, 1/A/1605:1609 | No text annotation | ||
| IL_6HA1_055 | 1/A/1483:1486, 1/A/1599:1603 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_6HA1_056 | 1/A/1488:1490, 1/A/1596:1597 | Major groove platform | geometric IL_5Y85_005 IL_48076.6 | |
| IL_6HA1_057 | 1/A/1515:1518, 1/A/1567:1571 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_6HA1_058 | 1/A/1522:1525, 1/A/1560:1563 | Double sheared | geometric IL_4LFB_060 IL_09705.15 | |
| IL_6HA1_060 | 1/A/1535:1537, 1/A/1545:1546 | Single bulged A | homologous IL_5J7L_302 IL_31462.5 | |
| IL_6HA1_061 | 1/A/1573:1576, 1/A/1590:1594 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_6HA1_062 | 1/A/1696:1701, 1/A/2033:2035 | No text annotation | homologous IL_4WF9_062 IL_12566.4 | |
| IL_6HA1_063 | 1/A/1708:1710, 1/A/2024:2026 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_6HA1_064 | 1/A/1711:1714, 1/A/2022:2023 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_6HA1_187 | 1/A/1711:1719, 1/A/2019:2023 | No text annotation | homologous IL_4WF9_117 IL_22854.4 | |
| IL_6HA1_065 | 1/A/1714:1719, 1/A/2019:2022 | Intercalated tWH | homologous IL_4WF9_065 IL_76758.2 | |
| IL_6HA1_066 | 1/A/1731:1736, 1/A/1741:1747 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6HA1_067 | 1/A/1756:1761, 1/A/1772:1776 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
| IL_6HA1_068 | 1/A/1799:1800, 1/A/2009:2011 | Single bulged A | homologous IL_5J7L_312 IL_31462.5 | |
| IL_6HA1_069 | 1/A/1827:1833, 1/A/1842:1850 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6HA1_070 | 1/A/1866:1869, 1/A/1931:1932 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_6HA1_071 | 1/A/1870:1871, 1/A/1927:1930 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_6HA1_072 | 1/A/1875:1878, 1/A/1922:1923 | Major groove minor groove platform; mini C-loop | homologous IL_7A0S_068 IL_68140.4 | |
| IL_6HA1_073 | 1/A/1880:1884, 1/A/1916:1920 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_6HA1_074 | 1/A/1885:1889, 1/A/1911:1915 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_6HA1_075 | 1/A/1893:1896, 1/A/1903:1907 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_6HA1_076 | 1/A/1962:1963, 1/A/1993:1996 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_6HA1_077 | 1/A/1963:1974, 1/A/1990:1993 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_6HA1_078 | 1/A/2079:2081, 1/A/2646:2647 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6HA1_079 | 1/A/2083:2085, 1/A/2641:2644 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_6HA1_080 | 1/A/2096:2098, 1/A/2471:2472 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6HA1_081 | 1/A/2099:2100, 1/A/2467:2470 | Minor groove platform | homologous IL_7A0S_076 IL_51454.2 | |
| IL_6HA1_082 | 1/A/2110:2112, 1/A/2265:2268 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6HA1_083 | 1/A/2124:2126, 1/A/2221:2223 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_87907.2 | |
| IL_6HA1_196 | 1/A/2135:2150, 1/A/2206:2212 | No text annotation | ||
| IL_6HA1_085 | 1/A/2153:2157, 1/A/2189:2203 | No text annotation | ||
| IL_6HA1_086 | 1/A/2158:2165, 1/A/2184:2188 | Kink-turn | homologous IL_3U4M_004 IL_70923.9 | |
| IL_6HA1_087 | 1/A/2231:2233, 1/A/2249:2250 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_6HA1_088 | 1/A/2379:2382, 1/A/2393:2396 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_6HA1_089 | 1/A/2430:2432, 1/A/2443:2444 | Single bulged U | homologous IL_5J7L_334 IL_89505.4 | |
| IL_6HA1_090 | 1/A/2482:2483, 1/A/2527:2529 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_6HA1_091 | 1/A/2483:2484, 1/A/2525:2527 | Major groove platform | geometric IL_4WF9_090 IL_48076.6 | |
| IL_6HA1_092 | 1/A/2486:2488, 1/A/2522:2523 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
| IL_6HA1_093 | 1/A/2488:2490, 1/A/2518:2522 | Major groove minor groove platform with extra cWW | geometric IL_4WF9_092 IL_51387.2 | |
| IL_6HA1_094 | 1/A/2495:2499, 1/A/2509:2513 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_6HA1_095 | 1/A/2536:2537, 1/A/2609:2611 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_6HA1_096 | 1/A/2539:2541, 1/A/2603:2607 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_6HA1_097 | 1/A/2541:2542, 1/A/2600:2603 | No text annotation | geometric IL_4WF9_096 IL_42626.2 | |
| IL_6HA1_098 | 1/A/2551:2552, 1/A/2569:2572 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_6HA1_099 | 1/A/2620:2621, 1/A/2630:2632 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6HA1_100 | 1/A/2665:2669, 1/A/2803:2811 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6HA1_101 | 1/A/2681:2687, 1/A/2692:2697 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.4 | |
| IL_6HA1_102 | 1/A/2709:2713, 1/A/2754:2756 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_6HA1_103 | 1/A/2716:2720, 1/A/2747:2751 | No text annotation | homologous IL_4WF9_102 IL_23774.1 | |
| IL_6HA1_104 | 1/A/2724:2725, 1/A/2740:2743 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_6HA1_105 | 1/A/2766:2771, 1/A/2791:2796 | UAA/GAN with extra cWW | homologous IL_4WF9_104 IL_49767.8 | |
| IL_6HA1_106 | 1/A/2863:2864, 1/A/2903:2905 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6HA1_107 | 1/A/2868:2870, 1/A/2896:2899 | No text annotation | homologous IL_4WF9_107 IL_31531.3 | |
| IL_6HA1_108 | 1/A/2872:2877, 1/A/2890:2894 | tHS double platform | homologous IL_4WF9_108 IL_70411.2 | |
| IL_6HA1_109 | 1/B/15:16, 1/B/63:65 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.5 | |
| IL_6HA1_110 | 1/B/21:27, 1/B/53:58 | No text annotation | ||
| IL_6HA1_111 | 1/B/28:29, 1/B/49:52 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_6HA1_112 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_6HA1_113 | 1/B/69:77, 1/B/95:103 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_6HA1_114 | 1/B/78:80, 1/B/92:94 | Isolated non-canonical cWW pair | geometric IL_4KYY_002 IL_07785.1 | |
| IL_6HA1_115 | 1/a/32:34, 1/a/561:562 | Single bulged G | homologous IL_5J7L_001 IL_00225.13 | |
| IL_6HA1_116 | 1/a/46:47, 1/a/404:406 | Single bulged A | homologous IL_5J7L_002 IL_31462.5 | |
| IL_6HA1_117 | 1/a/49:54, 1/a/367:369 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_6HA1_118 | 1/a/56:58, 1/a/364:365 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_6HA1_119 | 1/a/65:68, 1/a/101:102 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_6HA1_190 | 1/a/69:71, 1/a/98:100 | Decoding loop with one bulged A | geometric IL_3LOA_003 IL_10167.5 | |
| IL_6HA1_121 | 1/a/74:76, 1/a/92:95 | No text annotation | ||
| IL_6HA1_191 | 1/a/74:78, 1/a/91:95 | No text annotation | ||
| IL_6HA1_122 | 1/a/76:78, 1/a/91:92 | No text annotation | ||
| IL_6HA1_123 | 1/a/127:130, 1/a/239:240 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_6HA1_124 | 1/a/131:135, 1/a/235:238 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_6HA1_125 | 1/a/146:152, 1/a/167:174 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_6HA1_126 | 1/a/250:255, 1/a/285:292 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_6HA1_127 | 1/a/257:260, 1/a/282:283 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_6HA1_128 | 1/a/300:301, 1/a/312:316 | C-loop | homologous IL_5J7L_016 IL_03109.3 | |
| IL_6HA1_129 | 1/a/375:377, 1/a/400:401 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_6HA1_130 | 1/a/379:383, 1/a/397:398 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_6HA1_131 | 1/a/383:384, 1/a/395:397 | Single bulged G | homologous IL_4LFB_016 IL_00225.13 | |
| IL_6HA1_132 | 1/a/417:424, 1/a/435:441 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
| IL_6HA1_133 | 1/a/454:458, 1/a/492:497 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_6CZR_130 NA | |
| IL_6HA1_193 | 1/a/454:464, 1/a/486:497 | No text annotation | ||
| IL_6HA1_134 | 1/a/458:464, 1/a/486:492 | No text annotation | ||
| IL_6HA1_135 | 1/a/513:520, 1/a/549:550 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_6HA1_136 | 1/a/524:530, 1/a/537:545 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6HA1_137 | 1/a/578:584, 1/a/890:891 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_6HA1_138 | 1/a/589:593, 1/a/766:770 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_6HA1_139 | 1/a/603:605, 1/a/653:654 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_6HA1_140 | 1/a/606:607, 1/a/649:652 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_6HA1_141 | 1/a/613:614, 1/a/641:643 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_6HA1_142 | 1/a/614:621, 1/a/637:641 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_6HA1_143 | 1/a/663:664, 1/a/760:763 | Major groove platform; stack outside cWW | geometric IL_5J7L_031 IL_50694.7 | |
| IL_6HA1_144 | 1/a/666:668, 1/a/755:758 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_6HA1_145 | 1/a/671:675, 1/a/749:752 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_6HA1_194 | 1/a/682:686, 1/a/722:726 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_6HA1_147 | 1/a/693:697, 1/a/708:715 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_6HA1_148 | 1/a/783:787, 1/a/813:814 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_6HA1_149 | 1/a/788:792, 1/a/808:812 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_6HA1_150 | 1/a/897:904, 1/a/915:920 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_6HA1_151 | 1/a/932:933, 1/a/1402:1404 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_6HA1_152 | 1/a/935:937, 1/a/1399:1400 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_6HA1_153 | 1/a/943:945, 1/a/1389:1393 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_6HA1_154 | 1/a/963:964, 1/a/1235:1237 | Minor groove platform | homologous IL_4LFB_038 IL_51454.2 | |
| IL_6HA1_155 | 1/a/1003:1007, 1/a/1054:1055 | Minor groove platform | homologous IL_5J7L_043 IL_47078.3 | |
| IL_6HA1_197 | 1/a/1008:1009, 1/a/1051:1053 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_6HA1_157 | 1/a/1058:1060, 1/a/1217:1218 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_6HA1_158 | 1/a/1062:1066, 1/a/1213:1215 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_6HA1_159 | 1/a/1067:1068, 1/a/1208:1212 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_6HA1_160 | 1/a/1070:1071, 1/a/1204:1206 | Single bulged A | homologous IL_5J7L_049 IL_31462.5 | |
| IL_6HA1_161 | 1/a/1071:1073, 1/a/1202:1204 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_6HA1_162 | 1/a/1134:1137, 1/a/1154:1158 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_6HA1_163 | 1/a/1139:1142, 1/a/1151:1152 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_6HA1_164 | 1/a/1167:1170, 1/a/1184:1190 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_6HA1_165 | 1/a/1256:1262, 1/a/1293:1299 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_6HA1_166 | 1/a/1264:1267, 1/a/1286:1291 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_6HA1_167 | 1/a/1268:1271, 1/a/1282:1285 | Double sheared | geometric IL_1SAQ_002 NA | |
| IL_6HA1_168 | 1/a/1312:1317, 1/a/1338:1343 | No text annotation | geometric IL_4LFB_055 IL_85536.2 | |
| IL_6HA1_169 | 1/a/1408:1410, 1/a/1511:1514 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_6HA1_170 | 1/a/1410:1413, 1/a/1507:1511 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6HA1_171 | 1/a/1414:1416, 1/a/1504:1506 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_87907.2 | |
| IL_6HA1_172 | 1/a/1416:1418, 1/a/1501:1504 | No text annotation | geometric IL_8UO6_002 IL_31737.3 | |
| IL_6HA1_173 | 1/a/1421:1423, 1/a/1496:1498 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_6HA1_174 | 1/a/1425:1428, 1/a/1491:1494 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_6HA1_175 | 1/a/1433:1436, 1/a/1483:1486 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_6HA1_176 | 1/a/1439:1444, 1/a/1476:1480 | Triple sheared related | geometric IL_5J7L_063 IL_80231.1 | |
| IL_6HA1_177 | 1/a/1444:1446, 1/a/1474:1476 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_6HA1_178 | 1/a/1449:1452, 1/a/1469:1471 | Isolated tHS basepair with bulges | geometric IL_7RQB_012 NA | |
| IL_6HA1_179 | 1/a/1454:1457, 1/a/1465:1467 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_6HA1_180 | 1/x/47:49, 1/x/55:56 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6HA1_181 | No text annotation | ||
| IL_6HA1_182 | No text annotation | ||
| IL_6HA1_024 | No text annotation | ||
| IL_6HA1_184 | Isolated cWS basepair | ||
| IL_6HA1_185 | Isolated non-canonical cWW pair | ||
| IL_6HA1_030 | Tandem non-canonical cWW pairs | ||
| IL_6HA1_059 | No text annotation | ||
| IL_6HA1_186 | Isolated non-canonical cWW with bulges | ||
| IL_6HA1_084 | No text annotation | ||
| IL_6HA1_188 | No text annotation | ||
| IL_6HA1_189 | No text annotation | ||
| IL_6HA1_120 | Tandem non-canonical cWW pairs | ||
| IL_6HA1_192 | No text annotation | ||
| IL_6HA1_146 | No text annotation | ||
| IL_6HA1_156 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6HA1_001 | 1/A/30:31, 1/A/521:528, 1/A/555:556 | No text annotation | homologous J3_5J7L_036 J3_60031.2 | |
| J3_6HA1_028 | 1/A/30:31, 1/A/521:531, 1/A/542:556 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_6HA1_029 | 1/A/32:35, 1/A/492:508, 1/A/515:520 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_6HA1_030 | 1/A/56:57, 1/A/70:76, 1/A/109:113 | No text annotation | homologous J3_4WF9_013 J3_35667.2 | |
| J3_6HA1_002 | 1/A/56:67, 1/A/74:76, 1/A/109:113 | No text annotation | geometric J3_4WF9_001 J3_47707.1 | |
| J3_6HA1_003 | 1/A/272:276, 1/A/295:302, 1/A/416:417 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_6HA1_004 | 1/A/730:736, 1/A/820:822, 1/A/838:841 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_6HA1_005 | 1/A/744:747, 1/A/779:783, 1/A/807:812 | No text annotation | geometric J3_5TBW_005 NA | |
| J3_6HA1_031 | 1/A/1101:1103, 1/A/1127:1137, 1/A/1146:1150 | No text annotation | ||
| J3_6HA1_007 | 1/A/1337:1342, 1/A/1670:1672, 1/A/1684:1687 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6HA1_008 | 1/A/1344:1348, 1/A/1650:1656, 1/A/1665:1668 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_6HA1_009 | 1/A/1383:1389, 1/A/1420:1424, 1/A/1441:1442 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_6HA1_032 | 1/A/1470:1475, 1/A/1612:1613, 1/A/1616:1622 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_6HA1_010 | 1/A/2120:2122, 1/A/2225:2230, 1/A/2251:2257 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_6HA1_033 | 1/A/2311:2313, 1/A/2413:2424, 1/A/2450:2456 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_6HA1_011 | 1/A/2324:2328, 1/A/2346:2352, 1/A/2361:2366 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_6HA1_034 | 1/A/2546:2549, 1/A/2574:2576, 1/A/2590:2596 | No text annotation | homologous J3_4WF9_009 J3_32601.5 | |
| J3_6HA1_013 | 1/A/2838:2840, 1/A/2856:2861, 1/A/2907:2912 | No text annotation | ||
| J3_6HA1_014 | 1/B/9:14, 1/B/66:68, 1/B/104:107 | No text annotation | ||
| J3_6HA1_015 | 1/a/48:49, 1/a/369:375, 1/a/401:403 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_6HA1_035 | 1/a/48:54, 1/a/367:375, 1/a/401:403 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_6HA1_016 | 1/a/595:597, 1/a/660:663, 1/a/763:764 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_6HA1_036 | 1/a/595:597, 1/a/660:664, 1/a/760:764 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_6HA1_017 | 1/a/681:682, 1/a/726:734, 1/a/741:743 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_6HA1_018 | 1/a/835:838, 1/a/867:871, 1/a/878:884 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_6HA1_019 | 1/a/946:949, 1/a/1353:1359, 1/a/1381:1388 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_6HA1_020 | 1/a/953:956, 1/a/1244:1246, 1/a/1346:1349 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_6HA1_021 | 1/a/965:972, 1/a/983:994, 1/a/1230:1234 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_6HA1_022 | 1/a/1000:1003, 1/a/1055:1057, 1/a/1219:1224 | No text annotation | homologous J3_5J7L_007 J3_82572.1 | |
| J3_6HA1_037 | 1/a/1000:1007, 1/a/1054:1057, 1/a/1219:1224 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_6HA1_023 | 1/a/1013:1018, 1/a/1031:1036, 1/a/1045:1047 | No text annotation | ||
| J3_6HA1_024 | 1/a/1073:1078, 1/a/1117:1123, 1/a/1196:1202 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_6HA1_038 | 1/a/1083:1084, 1/a/1093:1096, 1/a/1109:1112 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_6HA1_026 | 1/a/1126:1128, 1/a/1164:1167, 1/a/1190:1193 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_6HA1_039 | 1/a/1126:1128, 1/a/1164:1170, 1/a/1184:1193 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_6HA1_027 | 1/a/1246:1250, 1/a/1305:1312, 1/a/1343:1346 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J4_6HA1_001 | 1/A/271:272, 1/A/417:422, 1/A/446:453, 1/A/468:471 | No text annotation | homologous J4_4WF9_001 J4_45801.6 | |
| J4_6HA1_002 | 1/A/340:344, 1/A/360:363, 1/A/367:369, 1/A/381:385 | No text annotation | homologous J4_4WF9_002 J4_71729.5 | |
| J4_6HA1_003 | 1/A/645:648, 1/A/670:674, 1/A/681:684, 1/A/696:703 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_6HA1_004 | 1/A/1310:1315, 1/A/1333:1334, 1/A/1690:1693, 1/A/2038:2039 | No text annotation | homologous J4_4WF9_004 J4_64571.5 | |
| J4_6HA1_005 | 1/A/1349:1353, 1/A/1377:1382, 1/A/1443:1444, 1/A/1642:1649 | No text annotation | homologous J4_4WF9_005 J4_69051.6 | |
| J4_6HA1_006 | 1/A/1352:1353, 1/A/1377:1382, 1/A/1443:1444, 1/A/1642:1648 | No text annotation | homologous J4_4WF9_006 J4_10313.5 | |
| J4_6HA1_015 | 1/A/1491:1492, 1/A/1513:1514, 1/A/1572:1573, 1/A/1594:1595 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_6HA1_007 | 1/A/1491:1493, 1/A/1512:1514, 1/A/1572:1573, 1/A/1594:1595 | No text annotation | ||
| J4_6HA1_008 | 1/A/1801:1805, 1/A/1817:1821, 1/A/1856:1859, 1/A/2004:2008 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_6HA1_009 | 1/A/1862:1864, 1/A/1934:1935, 1/A/1953:1962, 1/A/1996:2001 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_6HA1_010 | 1/A/2314:2318, 1/A/2372:2376, 1/A/2399:2401, 1/A/2410:2412 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_6HA1_011 | 1/A/2672:2675, 1/A/2703:2705, 1/A/2760:2764, 1/A/2798:2800 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_6HA1_012 | 1/a/113:121, 1/a/246:248, 1/a/294:297, 1/a/319:320 | No text annotation | ||
| J4_6HA1_013 | 1/a/141:143, 1/a/177:183, 1/a/206:212, 1/a/227:229 | No text annotation | ||
| J4_6HA1_014 | 1/a/584:586, 1/a/773:778, 1/a/819:830, 1/a/889:890 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J5_6HA1_001 | 1/A/47:54, 1/A/115:120, 1/A/129:130, 1/A/149:151, 1/A/178:180 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_6HA1_002 | 1/A/271:276, 1/A/295:302, 1/A/416:422, 1/A/446:453, 1/A/468:471 | No text annotation | ||
| J5_6HA1_003 | 1/A/577:579, 1/A/604:608, 1/A/621:623, 1/A/1301:1302, 1/A/2046:2047 | No text annotation | homologous J5_4WF9_003 J5_43153.5 | |
| J5_6HA1_004 | 1/A/628:633, 1/A/715:718, 1/A/856:859, 1/A/1236:1237, 1/A/1290:1296 | No text annotation | homologous J5_4WF9_004 J5_74302.5 | |
| J5_6HA1_005 | 1/A/1719:1727, 1/A/1751:1752, 1/A/1780:1781, 1/A/1785:1793, 1/A/2017:2019 | No text annotation | homologous J5_4WF9_005 J5_62523.6 | |
| J5_6HA1_006 | 1/A/2086:2093, 1/A/2475:2482, 1/A/2529:2536, 1/A/2611:2617, 1/A/2635:2640 | No text annotation | ||
| J5_6HA1_007 | 1/A/2103:2106, 1/A/2272:2275, 1/A/2287:2288, 1/A/2310:2311, 1/A/2456:2464 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_6HA1_008 | 1/a/38:41, 1/a/411:414, 1/a/444:449, 1/a/502:509, 1/a/554:557 | No text annotation | ||
| J5_6HA1_009 | 1/a/60:63, 1/a/104:111, 1/a/322:324, 1/a/345:347, 1/a/358:362 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_6HA1_010 | 1/x/7:10, 1/x/26:28, 1/x/44:46, 1/x/57:60, 1/x/76:77 | No text annotation | homologous J5_3ZGZ_001 J5_20390.1 | |
| J6_6HA1_001 | 1/A/45:46, 1/A/181:186, 1/A/217:227, 1/A/234:238, 1/A/265:269, 1/A/473:480 | No text annotation | ||
| J6_6HA1_002 | 1/A/2103:2106, 1/A/2272:2275, 1/A/2287:2288, 1/A/2310:2313, 1/A/2413:2424, 1/A/2450:2464 | No text annotation | ||
| J7_6HA1_002 | 1/A/864:869, 1/A/882:883, 1/A/989:992, 1/A/1017:1022, 1/A/1033:1037, 1/A/1209:1210, 1/A/1226:1231 | No text annotation | ||
| J8_6HA1_001 | 1/A/8:15, 1/A/571:577, 1/A/2047:2052, 1/A/2069:2072, 1/A/2654:2659, 1/A/2817:2820, 1/A/2831:2836, 1/A/2914:2919 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6HA1_006 | No text annotation | ||
| J3_6HA1_012 | No text annotation | ||
| J3_6HA1_025 | No text annotation | ||
| J3_6HA1_040 | No text annotation | ||
| J7_6HA1_001 | No text annotation |
Coloring options: