HL_6HA1_048

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6HA1|1|A|U|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_048 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.1208

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

6HA1|1|A|G|1978
6HA1|1|A|G|1979
6HA1|1|A|U|1980
6HA1|1|A|A|1981
6HA1|1|A|A|1982
6HA1|1|A|G|1983
6HA1|1|A|U|1984
6HA1|1|A|U|1985
6HA1|1|A|C|1986

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain a

Small subunit ribosomal RNA; SSU rRNA