HL_6HA1_049

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6HA1|1|A|A|2059, 6HA1|1|A|A|2060, 6HA1|1|A|G|2061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_049 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1257

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

6HA1|1|A|G|2056
6HA1|1|A|U|2057
6HA1|1|A|G|2058
6HA1|1|A|A|2059
6HA1|1|A|A|2060
6HA1|1|A|G|2061
6HA1|1|A|A|2062
6HA1|1|A|U|2063
6HA1|1|A|G|2064
6HA1|1|A|C|2065

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3