HL_6HA1_052

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6HA1|1|A|G|2279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_052 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.1165

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HA1|1|A|C|2277
6HA1|1|A|U|2278
6HA1|1|A|G|2279
6HA1|1|A|G|2280
6HA1|1|A|G|2281
6HA1|1|A|G|2282
6HA1|1|A|C|2283
6HA1|1|A|G|2284
6HA1|1|A|G|2285

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27

Chain x

Transfer RNA; tRNA