HL_6HA1_053

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6HA1|1|A|A|2297, 6HA1|1|A|C|2304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_053 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.0999

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6HA1|1|A|C|2293
6HA1|1|A|U|2294
6HA1|1|A|A|2295
6HA1|1|A|A|2296
6HA1|1|A|A|2297
6HA1|1|A|A|2298
6HA1|1|A|G|2299
6HA1|1|A|G|2300
6HA1|1|A|U|2301
6HA1|1|A|A|2302
6HA1|1|A|A|2303
6HA1|1|A|C|2304
6HA1|1|A|G|2305

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27