HL_6HA1_067

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

6HA1|1|A|A|2845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1017

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6HA1|1|A|A|2844
6HA1|1|A|A|2845
6HA1|1|A|A|2846
6HA1|1|A|G|2847
6HA1|1|A|A|2848
6HA1|1|A|U|2849
6HA1|1|A|G|2850
6HA1|1|A|A|2851
6HA1|1|A|U|2852

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17