HL_6HA1_103

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAUUGGUAGAC

Length

13 nucleotides

Bulged bases

6HA1|1|x|U|16, 6HA1|1|x|U|17, 6HA1|1|x|G|18, 6HA1|1|x|G|19, 6HA1|1|x|U|20, 6HA1|1|x|G|22

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_103 not in the Motif Atlas

Homologous match to HL_1SER_001

Geometric discrepancy: 0.5499

The information below is about HL_1SER_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.3

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

6HA1|1|x|G|12
6HA1|1|x|G|13
6HA1|1|x|A|14
6HA1|1|x|A|15
6HA1|1|x|U|16
6HA1|1|x|U|17
6HA1|1|x|G|18
6HA1|1|x|G|19
6HA1|1|x|U|20
6HA1|1|x|A|21
6HA1|1|x|G|22
6HA1|1|x|A|23
6HA1|1|x|C|24

Current chains

Chain x

P-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5