HL_6HCF_001

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAGCGGUUAUC

Length

12 nucleotides

Bulged bases

6HCF|1|23|C|16, 6HCF|1|23|G|18, 6HCF|1|23|G|19, 6HCF|1|23|U|20|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_001 not in the Motif Atlas

Homologous match to HL_1SER_001

Geometric discrepancy: 0.5181

The information below is about HL_1SER_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.3

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

6HCF|1|23|G|12
6HCF|1|23|U|13
6HCF|1|23|A|14
6HCF|1|23|G|15
6HCF|1|23|C|16
6HCF|1|23|G|18
6HCF|1|23|G|19
6HCF|1|23|U|20
6HCF|1|23|U|20|||A
6HCF|1|23|A|21
6HCF|1|23|U|22
6HCF|1|23|C|23

Current chains

Chain 23

P-site tRNA

Nearby chains

Chain 52

Large subunit ribosomal RNA; LSU rRNA

Chain J3

Ribosomal protein L11

Chain o3

eL42