6HCF Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6HCF_001 | 1/23/12:23 | No text annotation | homologous HL_1SER_001 NA | |
| HL_6HCF_002 | 1/23/31:39 | tRNA anticodon loop | homologous HL_6UFM_002 NA | |
| HL_6HCF_003 | 1/23/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1U0B_003 HL_33597.1 | |
| HL_6HCF_157 | 1/52/37:44 | No text annotation | homologous HL_8CRE_001 NA | |
| HL_6HCF_005 | 1/52/68:73 | No text annotation | homologous HL_5TBW_002 NA | |
| HL_6HCF_006 | 1/52/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_6HCF_007 | 1/52/131:137 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_6HCF_008 | 1/52/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6HCF_009 | 1/52/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_6HCF_010 | 1/52/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_6HCF_011 | 1/52/289:298 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_6HCF_012 | 1/52/314:323 | Pseudoknot geometry | geometric HL_4QLM_002 HL_00911.1 | |
| HL_6HCF_013 | 1/52/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6HCF_014 | 1/52/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6HCF_160 | 1/52/962:970 | No text annotation | ||
| HL_6HCF_161 | 1/52/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_013 NA | |
| HL_6HCF_020 | 1/52/1362:1375 | No text annotation | ||
| HL_6HCF_021 | 1/52/1389:1394 | GNRA | homologous HL_5TBW_016 NA | |
| HL_6HCF_121 | 1/52/1431:1453 | No text annotation | ||
| HL_6HCF_023 | 1/52/1436:1448 | No text annotation | ||
| HL_6HCF_024 | 1/52/1479:1486 | No text annotation | ||
| HL_6HCF_025 | 1/52/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_6HCF_163 | 1/52/1590:1604 | No text annotation | ||
| HL_6HCF_026 | 1/52/1592:1603 | No text annotation | ||
| HL_6HCF_123 | 1/52/1626:1636 | No text annotation | ||
| HL_6HCF_027 | 1/52/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6HCF_028 | 1/52/1675:1680 | No text annotation | geometric HL_4V9F_026 HL_27530.1 | |
| HL_6HCF_125 | 1/52/1814:1824 | No text annotation | ||
| HL_6HCF_030 | 1/52/1816:1823 | No text annotation | ||
| HL_6HCF_031 | 1/52/1864:1870 | GNRA | homologous HL_5TBW_025 NA | |
| HL_6HCF_032 | 1/52/1886:1893 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6HCF_033 | 1/52/1978:1988 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_6HCF_165 | 1/52/2006:2013 | GNRA wlth tandem sheared | homologous HL_8P9A_140 HL_98423.1 | |
| HL_6HCF_035 | 1/52/2087:2270 | No text annotation | ||
| HL_6HCF_036 | 1/52/2317:2322 | GNRA | homologous HL_5TBW_030 NA | |
| HL_6HCF_127 | 1/52/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6HCF_166 | 1/52/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8CRE_031 NA | |
| HL_6HCF_039 | 1/52/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6HCF_040 | 1/52/2482:2496 | No text annotation | ||
| HL_6HCF_167 | 1/52/2523:2532 | No text annotation | homologous HL_8CRE_034 NA | |
| HL_6HCF_043 | 1/52/2577:2584 | No text annotation | geometric HL_5NFV_001 HL_69752.3 | |
| HL_6HCF_168 | 1/52/2623:2633 | No text annotation | ||
| HL_6HCF_045 | 1/52/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_6HCF_131 | 1/52/2704:2712 | No text annotation | ||
| HL_6HCF_046 | 1/52/2705:2710 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6HCF_047 | 1/52/2738:2742 | No text annotation | ||
| HL_6HCF_048 | 1/52/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6HCF_049 | 1/52/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6HCF_050 | 1/52/2872:2877 | UNCG | homologous HL_5TBW_043 NA | |
| HL_6HCF_169 | 1/52/2901:3598 | No text annotation | ||
| HL_6HCF_052 | 1/52/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6HCF_170 | 1/52/3639:3649 | No text annotation | homologous HL_8CRE_044 NA | |
| HL_6HCF_054 | 1/52/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6HCF_171 | 1/52/3724:3729 | GNRA | homologous HL_8P9A_159 HL_34789.1 | |
| HL_6HCF_134 | 1/52/3756:3768 | No text annotation | homologous HL_8P9A_160 HL_70658.1 | |
| HL_6HCF_056 | 1/52/3757:3767 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_6HCF_172 | 1/52/3796:3804 | No text annotation | homologous HL_8CRE_048 NA | |
| HL_6HCF_058 | 1/52/3872:3883 | No text annotation | ||
| HL_6HCF_137 | 1/52/4191:4204 | No text annotation | ||
| HL_6HCF_060 | 1/52/4192:4202 | No text annotation | ||
| HL_6HCF_061 | 1/52/4208:4224 | No text annotation | ||
| HL_6HCF_062 | 1/52/4250:4258 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_6HCF_063 | 1/52/4270:4277 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6HCF_064 | 1/52/4301:4309 | No text annotation | homologous HL_5TBW_058 NA | |
| HL_6HCF_173 | 1/52/4321:4326 | GNRA | homologous HL_8P9A_170 HL_34789.1 | |
| HL_6HCF_141 | 1/52/4347:4365 | No text annotation | ||
| HL_6HCF_066 | 1/52/4352:4362 | No text annotation | geometric HL_2ZZM_002 NA | |
| HL_6HCF_142 | 1/52/4412:4430 | No text annotation | ||
| HL_6HCF_067 | 1/52/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6HCF_068 | 1/52/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6HCF_144 | 1/52/4495:4505 | No text annotation | ||
| HL_6HCF_069 | 1/52/4497:4503 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6HCF_070 | 1/52/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6HCF_071 | 1/52/4603:4608 | GNRA | homologous HL_5TBW_065 NA | |
| HL_6HCF_072 | 1/52/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6HCF_174 | 1/52/4680:4710 | No text annotation | ||
| HL_6HCF_073 | 1/52/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6HCF_075 | 1/52/4906:4915 | No text annotation | ||
| HL_6HCF_076 | 1/52/4975:4983 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_6HCF_077 | 1/52/5021:5028 | No text annotation | geometric HL_5U3G_001 NA | |
| HL_6HCF_175 | 1/72/32:45 | No text annotation | homologous HL_8OI5_068 HL_01182.1 | |
| HL_6HCF_078 | 1/72/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_6HCF_147 | 1/72/79:97 | No text annotation | ||
| HL_6HCF_079 | 1/72/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6HCF_080 | 1/82/46:57 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_6HCF_082 | 1/82/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6HCF_083 | 1/82/120:130 | No text annotation | ||
| HL_6HCF_084 | 1/A1/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6HCF_085 | 1/A1/69:80 | No text annotation | ||
| HL_6HCF_086 | 1/A1/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_6HCF_088 | 1/A1/288:295 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_6HCF_089 | 1/A1/377:387 | No text annotation | ||
| HL_6HCF_090 | 1/A1/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6HCF_176 | 1/A1/441:452 | No text annotation | homologous HL_8CRE_200 HL_86432.1 | |
| HL_6HCF_092 | 1/A1/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_6HCF_093 | 1/A1/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6HCF_150 | 1/A1/566:584 | No text annotation | ||
| HL_6HCF_095 | 1/A1/569:581 | No text annotation | homologous HL_4V88_199 NA | |
| HL_6HCF_096 | 1/A1/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6HCF_099 | 1/A1/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6HCF_100 | 1/A1/993:1000 | GNRA with extra cWW | geometric HL_7A0S_056 HL_45359.1 | |
| HL_6HCF_101 | 1/A1/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6HCF_152 | 1/A1/1112:1121 | No text annotation | geometric HL_4V9F_011 HL_75660.6 | |
| HL_6HCF_103 | 1/A1/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_6HCF_104 | 1/A1/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_6HCF_105 | 1/A1/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_6HCF_179 | 1/A1/1295:1304 | GNRA wlth extra near cWW | homologous HL_8CRE_217 HL_45359.1 | |
| HL_6HCF_107 | 1/A1/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_6HCF_155 | 1/A1/1363:1375 | No text annotation | ||
| HL_6HCF_108 | 1/A1/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6HCF_110 | 1/A1/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_6HCF_111 | 1/A1/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6HCF_156 | 1/A1/1613:1626 | No text annotation | ||
| HL_6HCF_112 | 1/A1/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6HCF_113 | 1/A1/1654:1670 | No text annotation | ||
| HL_6HCF_115 | 1/A1/1847:1852 | GNRA variation | homologous HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6HCF_116 | No text annotation | ||
| HL_6HCF_004 | No text annotation | ||
| HL_6HCF_117 | tRNA D-loop | ||
| HL_6HCF_118 | No text annotation | ||
| HL_6HCF_015 | No text annotation | ||
| HL_6HCF_158 | No text annotation | ||
| HL_6HCF_119 | No text annotation | ||
| HL_6HCF_159 | No text annotation | ||
| HL_6HCF_016 | No text annotation | ||
| HL_6HCF_017 | No text annotation | ||
| HL_6HCF_120 | No text annotation | ||
| HL_6HCF_018 | GNRA | ||
| HL_6HCF_019 | No text annotation | ||
| HL_6HCF_022 | No text annotation | ||
| HL_6HCF_162 | No text annotation | ||
| HL_6HCF_122 | No text annotation | ||
| HL_6HCF_029 | No text annotation | ||
| HL_6HCF_124 | No text annotation | ||
| HL_6HCF_164 | No text annotation | ||
| HL_6HCF_126 | No text annotation | ||
| HL_6HCF_034 | No text annotation | ||
| HL_6HCF_037 | No text annotation | ||
| HL_6HCF_038 | No text annotation | ||
| HL_6HCF_128 | No text annotation | ||
| HL_6HCF_129 | No text annotation | ||
| HL_6HCF_041 | No text annotation | ||
| HL_6HCF_042 | GNRA | ||
| HL_6HCF_130 | No text annotation | ||
| HL_6HCF_044 | No text annotation | ||
| HL_6HCF_132 | tRNA D-loop | ||
| HL_6HCF_051 | No text annotation | ||
| HL_6HCF_053 | No text annotation | ||
| HL_6HCF_133 | tRNA D-loop | ||
| HL_6HCF_055 | No text annotation | ||
| HL_6HCF_135 | No text annotation | ||
| HL_6HCF_057 | No text annotation | ||
| HL_6HCF_059 | No text annotation | ||
| HL_6HCF_136 | No text annotation | ||
| HL_6HCF_138 | No text annotation | ||
| HL_6HCF_139 | tRNA anticodon loop | ||
| HL_6HCF_140 | No text annotation | ||
| HL_6HCF_065 | GNRA with extra cWW | ||
| HL_6HCF_143 | No text annotation | ||
| HL_6HCF_145 | No text annotation | ||
| HL_6HCF_074 | tRNA D-loop | ||
| HL_6HCF_146 | No text annotation | ||
| HL_6HCF_081 | No text annotation | ||
| HL_6HCF_148 | No text annotation | ||
| HL_6HCF_087 | GNRA | ||
| HL_6HCF_091 | No text annotation | ||
| HL_6HCF_149 | No text annotation | ||
| HL_6HCF_177 | No text annotation | ||
| HL_6HCF_094 | No text annotation | ||
| HL_6HCF_097 | No text annotation | ||
| HL_6HCF_098 | No text annotation | ||
| HL_6HCF_178 | No text annotation | ||
| HL_6HCF_151 | No text annotation | ||
| HL_6HCF_102 | No text annotation | ||
| HL_6HCF_153 | GNRA with extra near cWW | ||
| HL_6HCF_154 | No text annotation | ||
| HL_6HCF_106 | No text annotation | ||
| HL_6HCF_109 | No text annotation | ||
| HL_6HCF_114 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6HCF_307 | 1/52/6:7, 1/82/149:151 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_6HCF_003 | 1/52/12:14, 1/82/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6HCF_308 | 1/52/30:37, 1/52/44:52 | tSH-tHW-tHH-tHS | homologous IL_8CRE_005 NA | |
| IL_6HCF_309 | 1/52/81:88, 1/52/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_235 IL_53348.1 | |
| IL_6HCF_005 | 1/52/118:121, 1/52/152:153 | Multiple bulged bases | geometric IL_4LFB_007 IL_75289.1 | |
| IL_6HCF_227 | 1/52/118:126, 1/52/142:153 | No text annotation | ||
| IL_6HCF_006 | 1/52/121:122, 1/52/147:152 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_6HCF_228 | 1/52/121:126, 1/52/142:152 | No text annotation | ||
| IL_6HCF_007 | 1/52/124:126, 1/52/142:145 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_6HCF_310 | 1/52/168:173, 1/52/263:267 | No text annotation | ||
| IL_6HCF_008 | 1/52/179:189, 1/52/252:257 | No text annotation | ||
| IL_6HCF_009 | 1/52/195:196, 1/52/244:246 | No text annotation | ||
| IL_6HCF_010 | 1/52/339:342, 1/82/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_6HCF_311 | 1/52/347:379, 1/82/21:27 | No text annotation | ||
| IL_6HCF_011 | 1/52/348:350, 1/82/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6HCF_012 | 1/52/387:390, 1/52/401:414 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_6HCF_013 | 1/52/415:421, 1/82/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_6HCF_312 | 1/52/438:450, 1/52/1297:1309 | No text annotation | ||
| IL_6HCF_014 | 1/52/443:447, 1/52/1299:1304 | No text annotation | ||
| IL_6HCF_015 | 1/52/448:451, 1/52/1296:1298 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.1 | |
| IL_6HCF_016 | 1/52/459:460, 1/52/695:697 | No text annotation | ||
| IL_6HCF_313 | 1/52/462:464, 1/52/691:693 | Isolated non-canonical cWW pair | geometric IL_8P9A_270 IL_01003.1 | |
| IL_6HCF_018 | 1/52/466:472, 1/52/682:689 | No text annotation | ||
| IL_6HCF_019 | 1/52/481:482, 1/52/672:673 | Single bulged C | geometric IL_1S03_006 IL_05642.1 | |
| IL_6HCF_020 | 1/52/482:487, 1/52/669:672 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_6HCF_233 | 1/52/482:493, 1/52/661:672 | No text annotation | ||
| IL_6HCF_021 | 1/52/487:488, 1/52/665:669 | Multiple bulged bases | geometric IL_1R3E_001 IL_44609.1 | |
| IL_6HCF_022 | 1/52/491:493, 1/52/661:662 | No text annotation | ||
| IL_6HCF_024 | 1/52/508:510, 1/52/649:650 | Single bulged A | geometric IL_6WPI_001 IL_14190.1 | |
| IL_6HCF_234 | 1/52/707:710, 1/52/1286:1290 | Tandem non-canonical cWW pairs | geometric IL_7KJT_003 NA | |
| IL_6HCF_025 | 1/52/709:710, 1/52/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_28408.1 | |
| IL_6HCF_026 | 1/52/723:725, 1/52/941:945 | No text annotation | ||
| IL_6HCF_027 | 1/52/727:731, 1/52/938:939 | No text annotation | ||
| IL_6HCF_235 | 1/52/727:737, 1/52/927:939 | No text annotation | ||
| IL_6HCF_028 | 1/52/731:737, 1/52/927:938 | No text annotation | ||
| IL_6HCF_029 | 1/52/737:739, 1/52/923:927 | No text annotation | ||
| IL_6HCF_315 | 1/52/745:752, 1/52/911:919 | No text annotation | geometric IL_8P9A_248 IL_25001.1 | |
| IL_6HCF_031 | 1/52/1074:1077, 1/52/1233:1236 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_6HCF_316 | 1/52/1077:1080, 1/52/1219:1233 | No text annotation | ||
| IL_6HCF_033 | 1/52/1082:1084, 1/52/1213:1217 | Isolated near basepair | geometric IL_7A0S_030 IL_42997.4 | |
| IL_6HCF_034 | 1/52/1086:1087, 1/52/1209:1211 | No text annotation | ||
| IL_6HCF_317 | 1/52/1173:1177, 1/52/1184:1188 | No text annotation | ||
| IL_6HCF_037 | 1/52/1357:1360, 1/52/1379:1382 | No text annotation | ||
| IL_6HCF_238 | 1/52/1357:1361, 1/52/1376:1382 | No text annotation | ||
| IL_6HCF_038 | 1/52/1360:1361, 1/52/1376:1379 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.1 | |
| IL_6HCF_039 | 1/52/1425:1430, 1/52/1454:1460 | No text annotation | ||
| IL_6HCF_040 | 1/52/1431:1435, 1/52/1449:1453 | Double sheared with non-canonical cWW | geometric IL_7A0S_087 IL_87767.1 | |
| IL_6HCF_041 | 1/52/1466:1472, 1/52/1492:1499 | No text annotation | ||
| IL_6HCF_042 | 1/52/1474:1476, 1/52/1489:1490 | No text annotation | ||
| IL_6HCF_239 | 1/52/1474:1478, 1/52/1487:1490 | No text annotation | ||
| IL_6HCF_043 | 1/52/1520:1522, 1/52/1655:1657 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_6HCF_044 | 1/52/1522:1526, 1/52/1648:1655 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_6HCF_318 | 1/52/1530:1537, 1/52/1622:1644 | No text annotation | ||
| IL_6HCF_045 | 1/52/1550:1551, 1/52/1576:1578 | Single bulged G | geometric IL_4LVW_002 IL_28408.1 | |
| IL_6HCF_319 | 1/52/1551:1555, 1/52/1572:1576 | Triple sheared | homologous IL_8CRE_033 NA | |
| IL_6HCF_047 | 1/52/1585:1589, 1/52/1605:1608 | No text annotation | ||
| IL_6HCF_048 | 1/52/1590:1592, 1/52/1603:1604 | Single bulged U | geometric IL_4V9F_029 IL_97561.1 | |
| IL_6HCF_049 | 1/52/1624:1626, 1/52/1636:1640 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_6HCF_050 | 1/52/1671:1673, 1/52/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6HCF_051 | 1/52/1686:1689, 1/52/1847:1851 | No text annotation | ||
| IL_6HCF_320 | 1/52/1694:1721, 1/52/1841:1842 | No text annotation | ||
| IL_6HCF_053 | 1/52/1723:1725, 1/52/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6HCF_243 | 1/52/1731:1738, 1/52/1790:1798 | No text annotation | ||
| IL_6HCF_054 | 1/52/1732:1738, 1/52/1790:1797 | No text annotation | ||
| IL_6HCF_321 | 1/52/1739:1744, 1/52/1786:1789 | C-loop with bulged stacked A's | homologous IL_8CRE_043 NA | |
| IL_6HCF_056 | 1/52/1746:1751, 1/52/1779:1784 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_6HCF_322 | 1/52/1753:1756, 1/52/1776:1777 | Major groove minor groove platform; mini C-loop | geometric IL_1U9S_004 NA | |
| IL_6HCF_058 | 1/52/1814:1816, 1/52/1823:1824 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_6HCF_323 | 1/52/1858:1860, 1/52/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8CRE_049 NA | |
| IL_6HCF_061 | 1/52/1905:1909, 1/52/2067:2071 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_6HCF_062 | 1/52/1911:1920, 1/52/2063:2065 | Isolated non-canonical cWW pair | geometric IL_3GM7_006 IL_01003.1 | |
| IL_6HCF_063 | 1/52/1920:1922, 1/52/2062:2063 | Single bulged C | geometric IL_3SNP_003 IL_05642.1 | |
| IL_6HCF_064 | 1/52/1926:1933, 1/52/2053:2058 | No text annotation | homologous IL_5TBW_051 NA | |
| IL_6HCF_065 | 1/52/1933:1944, 1/52/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6HCF_066 | 1/52/1946:1948, 1/52/2035:2036 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_6HCF_249 | 1/52/1949:2005, 1/52/2014:2034 | No text annotation | ||
| IL_6HCF_067 | 1/52/2001:2005, 1/52/2014:2016 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_36931.1 | |
| IL_6HCF_068 | 1/52/2083:2085, 1/52/2272:2273 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_6HCF_069 | 1/52/2298:2302, 1/52/2333:2336 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 NA | |
| IL_6HCF_070 | 1/52/2302:2309, 1/52/2329:2333 | Kink-turn | geometric IL_3V7E_002 NA | |
| IL_6HCF_324 | 1/52/2312:2315, 1/52/2324:2326 | Isolated non-canonical cWW pair | homologous IL_8CRE_064 NA | |
| IL_6HCF_072 | 1/52/2358:2364, 1/52/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_6HCF_073 | 1/52/2415:2419, 1/52/2427:2429 | C-loop | geometric IL_7A0S_047 IL_06671.1 | |
| IL_6HCF_074 | 1/52/2446:2450, 1/52/2509:2514 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_6HCF_075 | 1/52/2477:2479, 1/52/2499:2500 | Single stack bend | geometric IL_5VSU_003 IL_15011.1 | |
| IL_6HCF_076 | 1/52/2540:2542, 1/52/2775:2776 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_6HCF_077 | 1/52/2542:2547, 1/52/2772:2775 | No text annotation | ||
| IL_6HCF_325 | 1/52/2596:2602, 1/52/2737:2749 | No text annotation | ||
| IL_6HCF_078 | 1/52/2613:2614, 1/52/2724:2726 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_6HCF_079 | 1/52/2614:2615, 1/52/2722:2724 | Single stack bend | homologous IL_5TBW_070 NA | |
| IL_6HCF_080 | 1/52/2646:2648, 1/52/2685:2688 | Decoding loop related | geometric IL_2O3X_003 IL_61702.1 | |
| IL_6HCF_081 | 1/52/2651:2653, 1/52/2681:2682 | Single bulged G | geometric IL_7D7W_002 IL_28408.1 | |
| IL_6HCF_253 | 1/52/2651:2662, 1/52/2672:2682 | No text annotation | ||
| IL_6HCF_082 | 1/52/2655:2662, 1/52/2672:2679 | Kink-turn | geometric IL_5TBW_073 NA | |
| IL_6HCF_083 | 1/52/2704:2705, 1/52/2710:2712 | No text annotation | ||
| IL_6HCF_326 | 1/52/2832:2838, 1/52/3850:3853 | No text annotation | homologous IL_8P9A_302 IL_89862.1 | |
| IL_6HCF_085 | 1/52/2843:2846, 1/52/3842:3845 | No text annotation | ||
| IL_6HCF_086 | 1/52/2864:2865, 1/52/2885:2887 | Single stack bend | geometric IL_7KGA_003 NA | |
| IL_6HCF_087 | 1/52/2867:2872, 1/52/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6HCF_088 | 1/52/2888:2891, 1/52/3610:3613 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.1 | |
| IL_6HCF_089 | 1/52/2896:2897, 1/52/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6HCF_327 | 1/52/3631:3633, 1/52/3827:3830 | Isolated non-canonical cWW pair | geometric IL_4WF9_083 IL_01003.1 | |
| IL_6HCF_090 | 1/52/3632:3633, 1/52/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6HCF_091 | 1/52/3660:3665, 1/52/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6HCF_092 | 1/52/3700:3703, 1/52/3749:3750 | Major groove intercalation | geometric IL_5TBW_084 NA | |
| IL_6HCF_328 | 1/52/3704:3705, 1/52/3745:3748 | No text annotation | homologous IL_8CRE_090 NA | |
| IL_6HCF_094 | 1/52/3708:3710, 1/52/3741:3742 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_6HCF_329 | 1/52/3710:3721, 1/52/3732:3741 | No text annotation | ||
| IL_6HCF_095 | 1/52/3780:3792, 1/52/3808:3814 | No text annotation | ||
| IL_6HCF_330 | 1/52/3895:3898, 1/52/4563:4565 | No text annotation | homologous IL_8P9A_319 IL_75527.1 | |
| IL_6HCF_097 | 1/52/3899:3902, 1/52/4558:4562 | No text annotation | ||
| IL_6HCF_098 | 1/52/3913:3915, 1/52/4388:4389 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6HCF_099 | 1/52/3926:3929, 1/52/4181:4185 | No text annotation | ||
| IL_6HCF_332 | 1/52/4082:4088, 1/52/4161:4164 | No text annotation | homologous IL_8CRE_106 NA | |
| IL_6HCF_333 | 1/52/4091:4129, 1/52/4155:4158 | No text annotation | ||
| IL_6HCF_105 | 1/52/4191:4192, 1/52/4202:4204 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6HCF_106 | 1/52/4243:4245, 1/52/4263:4267 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_6HCF_334 | 1/52/4291:4293, 1/52/4317:4318 | Single bulged A | geometric IL_7MKY_001 IL_14190.1 | |
| IL_6HCF_108 | 1/52/4295:4297, 1/52/4314:4315 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_6HCF_335 | 1/52/4297:4298, 1/52/4312:4314 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6HCF_110 | 1/52/4347:4352, 1/52/4362:4365 | No text annotation | ||
| IL_6HCF_111 | 1/52/4400:4408, 1/52/4434:4444 | No text annotation | ||
| IL_6HCF_112 | 1/52/4412:4416, 1/52/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6HCF_113 | 1/52/4453:4454, 1/52/4526:4528 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6HCF_114 | 1/52/4456:4458, 1/52/4520:4524 | Isolated non-canonical cWW with bulges | homologous IL_5TBW_108 NA | |
| IL_6HCF_336 | 1/52/4458:4459, 1/52/4517:4520 | No text annotation | homologous IL_8CRE_117 NA | |
| IL_6HCF_116 | 1/52/4466:4470, 1/52/4485:4491 | No text annotation | ||
| IL_6HCF_117 | 1/52/4495:4497, 1/52/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_6HCF_337 | 1/52/4534:4538, 1/52/4547:4552 | No text annotation | geometric IL_8P9A_349 IL_71154.1 | |
| IL_6HCF_118 | 1/52/4537:4538, 1/52/4547:4549 | Single bulged A | geometric IL_4V88_409 NA | |
| IL_6HCF_119 | 1/52/4578:4580, 1/52/4724:4725 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6HCF_120 | 1/52/4580:4582, 1/52/4721:4724 | No text annotation | ||
| IL_6HCF_338 | 1/52/4580:4585, 1/52/4717:4724 | No text annotation | ||
| IL_6HCF_121 | 1/52/4582:4585, 1/52/4717:4721 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_6HCF_122 | 1/52/4590:4592, 1/52/4618:4620 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_6HCF_123 | 1/52/4596:4603, 1/52/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6HCF_124 | 1/52/4623:4630, 1/52/4668:4674 | No text annotation | ||
| IL_6HCF_339 | 1/52/4624:4637, 1/52/4662:4673 | No text annotation | ||
| IL_6HCF_125 | 1/52/4632:4637, 1/52/4662:4666 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_6HCF_126 | 1/52/4637:4642, 1/52/4655:4662 | No text annotation | ||
| IL_6HCF_340 | 1/52/4638:4644, 1/52/4653:4661 | No text annotation | ||
| IL_6HCF_127 | 1/52/4679:4685, 1/52/4705:4711 | No text annotation | ||
| IL_6HCF_341 | 1/52/4739:4746, 1/52/4954:4960 | No text annotation | ||
| IL_6HCF_342 | 1/52/4754:4766, 1/52/4868:4879 | No text annotation | ||
| IL_6HCF_271 | 1/52/4769:4773, 1/52/4862:4865 | No text annotation | geometric IL_2O3Y_003 IL_34618.1 | |
| IL_6HCF_130 | 1/52/4884:4888, 1/52/4931:4935 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_71154.1 | |
| IL_6HCF_131 | 1/52/4890:4896, 1/52/4924:4929 | No text annotation | ||
| IL_6HCF_132 | 1/52/4896:4902, 1/52/4919:4924 | No text annotation | ||
| IL_6HCF_344 | 1/52/4970:4991, 1/52/5060:5063 | No text annotation | ||
| IL_6HCF_345 | 1/52/4992:4994, 1/52/5057:5059 | Isolated non-canonical cWW pair | geometric IL_7QUA_003 NA | |
| IL_6HCF_346 | 1/52/4996:4997, 1/52/5053:5055 | No text annotation | ||
| IL_6HCF_135 | 1/52/5000:5003, 1/52/5044:5050 | No text annotation | ||
| IL_6HCF_347 | 1/52/5000:5009, 1/52/5039:5050 | No text annotation | ||
| IL_6HCF_136 | 1/52/5003:5009, 1/52/5039:5044 | No text annotation | ||
| IL_6HCF_137 | 1/52/5012:5017, 1/52/5032:5036 | No text annotation | ||
| IL_6HCF_138 | 1/72/15:16, 1/72/62:64 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_6HCF_139 | 1/72/21:27, 1/72/52:57 | Minor groove platform related | geometric IL_5TBW_373 NA | |
| IL_6HCF_348 | 1/72/21:29, 1/72/48:57 | No text annotation | ||
| IL_6HCF_140 | 1/72/27:30, 1/72/47:52 | No text annotation | ||
| IL_6HCF_141 | 1/72/32:36, 1/72/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_6HCF_142 | 1/72/71:78, 1/72/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6HCF_143 | 1/72/79:85, 1/72/92:97 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_6HCF_144 | 1/A1/23:25, 1/A1/649:651 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 NA | |
| IL_6HCF_145 | 1/A1/34:36, 1/A1/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6HCF_146 | 1/A1/37:40, 1/A1/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.1 | |
| IL_6HCF_147 | 1/A1/41:47, 1/A1/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_6HCF_148 | 1/A1/49:51, 1/A1/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6HCF_149 | 1/A1/57:62, 1/A1/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_6HCF_150 | 1/A1/63:69, 1/A1/80:85 | No text annotation | geometric IL_1M5K_001 IL_47352.1 | |
| IL_6HCF_151 | 1/A1/108:110, 1/A1/351:353 | Isolated non-canonical cWW pair | geometric IL_1ZX7_004 NA | |
| IL_6HCF_279 | 1/A1/108:115, 1/A1/348:353 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_6HCF_152 | 1/A1/110:115, 1/A1/348:351 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.1 | |
| IL_6HCF_153 | 1/A1/116:121, 1/A1/343:347 | No text annotation | homologous IL_4V88_393 NA | |
| IL_6HCF_281 | 1/A1/144:146, 1/A1/174:175 | Single stack bend | geometric IL_7MLX_001 NA | |
| IL_6HCF_282 | 1/A1/146:151, 1/A1/167:174 | No text annotation | ||
| IL_6HCF_156 | 1/A1/152:154, 1/A1/164:166 | Isolated non-canonical cWW contact | homologous IL_4V88_395 NA | |
| IL_6HCF_283 | 1/A1/220:221, 1/A1/300:302 | Single stack bend | geometric IL_8C3A_146 NA | |
| IL_6HCF_349 | 1/A1/312:314, 1/A1/336:337 | Single bulged A | homologous IL_8P9A_388 IL_14190.1 | |
| IL_6HCF_160 | 1/A1/317:320, 1/A1/331:333 | Other IL | geometric IL_5TBW_064 NA | |
| IL_6HCF_161 | 1/A1/320:323, 1/A1/329:331 | No text annotation | ||
| IL_6HCF_162 | 1/A1/359:364, 1/A1/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6HCF_163 | 1/A1/366:371, 1/A1/393:394 | No text annotation | geometric IL_4ERD_001 NA | |
| IL_6HCF_286 | 1/A1/409:413, 1/A1/424:431 | No text annotation | ||
| IL_6HCF_164 | 1/A1/411:413, 1/A1/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6HCF_350 | 1/A1/437:439, 1/A1/454:456 | Isolated cWH basepair | homologous IL_8CRE_411 IL_10892.1 | |
| IL_6HCF_166 | 1/A1/459:462, 1/A1/467:470 | Tandem non-canonical cWW pairs | geometric IL_4EYA_010 IL_15225.1 | |
| IL_6HCF_167 | 1/A1/487:489, 1/A1/511:512 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_6HCF_168 | 1/A1/491:496, 1/A1/506:509 | C-loop with extra cWW pair | homologous IL_4V88_408 NA | |
| IL_6HCF_169 | 1/A1/527:528, 1/A1/557:559 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6HCF_172 | 1/A1/563:565, 1/A1/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_6HCF_173 | 1/A1/566:569, 1/A1/581:584 | Tandem non-canonical cWW pairs | geometric IL_6JDV_001 IL_71194.1 | |
| IL_6HCF_352 | 1/A1/599:608, 1/A1/635:637 | No text annotation | ||
| IL_6HCF_353 | 1/A1/611:617, 1/A1/624:632 | No text annotation | homologous IL_8P9A_404 IL_52042.1 | |
| IL_6HCF_176 | 1/A1/665:671, 1/A1/1161:1162 | No text annotation | homologous IL_4V88_416 NA | |
| IL_6HCF_177 | 1/A1/673:675, 1/A1/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6HCF_178 | 1/A1/676:680, 1/A1/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6HCF_181 | 1/A1/802:803, 1/A1/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_6HCF_182 | 1/A1/805:807, 1/A1/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6HCF_183 | 1/A1/807:815, 1/A1/849:856 | No text annotation | homologous IL_4V88_425 NA | |
| IL_6HCF_184 | 1/A1/816:831, 1/A1/843:848 | No text annotation | ||
| IL_6HCF_185 | 1/A1/877:879, 1/A1/907:909 | Isolated cWH basepair | homologous IL_4V88_427 NA | |
| IL_6HCF_186 | 1/A1/922:923, 1/A1/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_6HCF_294 | 1/A1/922:926, 1/A1/1015:1022 | No text annotation | ||
| IL_6HCF_187 | 1/A1/924:927, 1/A1/1014:1018 | Tandem non-canonical cWW pairs | homologous IL_4V88_429 NA | |
| IL_6HCF_188 | 1/A1/927:935, 1/A1/1007:1014 | No text annotation | ||
| IL_6HCF_295 | 1/A1/938:945, 1/A1/981:1004 | No text annotation | ||
| IL_6HCF_189 | 1/A1/941:945, 1/A1/981:985 | Triple non-canonical cWW pairs | geometric IL_4LFB_065 IL_71154.1 | |
| IL_6HCF_190 | 1/A1/952:956, 1/A1/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_6HCF_354 | 1/A1/1042:1047, 1/A1/1071:1073 | No text annotation | homologous IL_8CRE_437 IL_31359.1 | |
| IL_6HCF_192 | 1/A1/1047:1051, 1/A1/1067:1071 | tSH-tHW-tHS | geometric IL_4LFB_033 IL_05821.1 | |
| IL_6HCF_193 | 1/A1/1098:1101, 1/A1/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_6HCF_194 | 1/A1/1101:1103, 1/A1/1129:1131 | Isolated cWH basepair | geometric IL_3D0M_002 NA | |
| IL_6HCF_195 | 1/A1/1108:1110, 1/A1/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_6HCF_355 | 1/A1/1168:1175, 1/A1/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8P9A_428 IL_84044.1 | |
| IL_6HCF_197 | 1/A1/1206:1208, 1/A1/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6HCF_198 | 1/A1/1230:1232, 1/A1/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_6HCF_199 | 1/A1/1235:1236, 1/A1/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6HCF_356 | 1/A1/1281:1290, 1/A1/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_6HCF_200 | 1/A1/1291:1294, 1/A1/1305:1308 | No text annotation | ||
| IL_6HCF_201 | 1/A1/1325:1327, 1/A1/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6HCF_202 | 1/A1/1329:1333, 1/A1/1498:1500 | Isolated cWS basepair | homologous IL_4V88_450 NA | |
| IL_6HCF_298 | 1/A1/1329:1335, 1/A1/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_6HCF_203 | 1/A1/1333:1335, 1/A1/1492:1498 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_6HCF_204 | 1/A1/1337:1338, 1/A1/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6HCF_205 | 1/A1/1347:1349, 1/A1/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6HCF_206 | 1/A1/1363:1365, 1/A1/1374:1375 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_6HCF_357 | 1/A1/1395:1399, 1/A1/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 NA | |
| IL_6HCF_208 | 1/A1/1402:1405, 1/A1/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_6HCF_300 | 1/A1/1537:1539, 1/A1/1594:1596 | Isolated non-canonical cWW pair | geometric IL_2OE5_001 NA | |
| IL_6HCF_301 | 1/A1/1541:1550, 1/A1/1582:1592 | No text annotation | ||
| IL_6HCF_210 | 1/A1/1550:1558, 1/A1/1577:1582 | No text annotation | ||
| IL_6HCF_211 | 1/A1/1560:1562, 1/A1/1573:1575 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_01003.1 | |
| IL_6HCF_212 | 1/A1/1604:1610, 1/A1/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_6HCF_213 | 1/A1/1700:1702, 1/A1/1833:1836 | No text annotation | homologous IL_4V88_463 NA | |
| IL_6HCF_214 | 1/A1/1702:1705, 1/A1/1829:1833 | No text annotation | geometric IL_5J7L_059 NA | |
| IL_6HCF_215 | 1/A1/1706:1708, 1/A1/1826:1828 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_6HCF_358 | 1/A1/1706:1711, 1/A1/1822:1828 | No text annotation | geometric IL_8SSW_003 IL_82292.2 | |
| IL_6HCF_216 | 1/A1/1708:1711, 1/A1/1822:1826 | No text annotation | geometric IL_1CSL_001 NA | |
| IL_6HCF_359 | 1/A1/1714:1716, 1/A1/1817:1819 | Isolated non-canonical cWW pair | homologous IL_8CRE_470 IL_01003.1 | |
| IL_6HCF_218 | 1/A1/1717:1720, 1/A1/1813:1816 | Double sheared | geometric IL_4V88_468 NA | |
| IL_6HCF_305 | 1/A1/1717:1722, 1/A1/1812:1816 | No text annotation | ||
| IL_6HCF_219 | 1/A1/1720:1722, 1/A1/1812:1813 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_6HCF_220 | 1/A1/1729:1731, 1/A1/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6HCF_360 | 1/A1/1733:1736, 1/A1/1798:1801 | Double sheared | homologous IL_8CRE_474 IL_58355.1 | |
| IL_6HCF_222 | 1/A1/1739:1741, 1/A1/1793:1795 | Isolated non-canonical cWW pair | geometric IL_3GM7_006 IL_01003.1 | |
| IL_6HCF_223 | 1/A1/1742:1746, 1/A1/1788:1792 | Triple sheared | homologous IL_4V88_474 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6HCF_001 | No text annotation | ||
| IL_6HCF_002 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_225 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_226 | No text annotation | ||
| IL_6HCF_004 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_6HCF_229 | No text annotation | ||
| IL_6HCF_230 | Isolated non-canonical cWW pair | ||
| IL_6HCF_231 | No text annotation | ||
| IL_6HCF_232 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_017 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_314 | No text annotation | ||
| IL_6HCF_023 | Isolated non-canonical cWW pair | ||
| IL_6HCF_236 | No text annotation | ||
| IL_6HCF_030 | No text annotation | ||
| IL_6HCF_032 | No text annotation | ||
| IL_6HCF_237 | Isolated non-canonical cWW pair | ||
| IL_6HCF_035 | Single stack bend | ||
| IL_6HCF_036 | No text annotation | ||
| IL_6HCF_240 | No text annotation | ||
| IL_6HCF_241 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_046 | No text annotation | ||
| IL_6HCF_242 | No text annotation | ||
| IL_6HCF_052 | No text annotation | ||
| IL_6HCF_244 | No text annotation | ||
| IL_6HCF_055 | No text annotation | ||
| IL_6HCF_245 | No text annotation | ||
| IL_6HCF_246 | No text annotation | ||
| IL_6HCF_057 | No text annotation | ||
| IL_6HCF_247 | Partly complementary | ||
| IL_6HCF_059 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_060 | Isolated cWS basepair | ||
| IL_6HCF_248 | No text annotation | ||
| IL_6HCF_071 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_250 | No text annotation | ||
| IL_6HCF_251 | No text annotation | ||
| IL_6HCF_252 | No text annotation | ||
| IL_6HCF_084 | No text annotation | ||
| IL_6HCF_254 | No text annotation | ||
| IL_6HCF_255 | No text annotation | ||
| IL_6HCF_256 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_257 | No text annotation | ||
| IL_6HCF_093 | No text annotation | ||
| IL_6HCF_258 | No text annotation | ||
| IL_6HCF_096 | No text annotation | ||
| IL_6HCF_259 | No text annotation | ||
| IL_6HCF_100 | No text annotation | ||
| IL_6HCF_260 | No text annotation | ||
| IL_6HCF_101 | Isolated near basepair | ||
| IL_6HCF_102 | Isolated non-canonical cWW pair | ||
| IL_6HCF_103 | No text annotation | ||
| IL_6HCF_261 | No text annotation | ||
| IL_6HCF_331 | No text annotation | ||
| IL_6HCF_104 | No text annotation | ||
| IL_6HCF_262 | No text annotation | ||
| IL_6HCF_107 | Isolated non-canonical cWW pair | ||
| IL_6HCF_263 | No text annotation | ||
| IL_6HCF_109 | No text annotation | ||
| IL_6HCF_264 | No text annotation | ||
| IL_6HCF_115 | No text annotation | ||
| IL_6HCF_265 | No text annotation | ||
| IL_6HCF_266 | No text annotation | ||
| IL_6HCF_267 | No text annotation | ||
| IL_6HCF_268 | No text annotation | ||
| IL_6HCF_269 | No text annotation | ||
| IL_6HCF_128 | No text annotation | ||
| IL_6HCF_270 | No text annotation | ||
| IL_6HCF_129 | No text annotation | ||
| IL_6HCF_272 | No text annotation | ||
| IL_6HCF_343 | No text annotation | ||
| IL_6HCF_273 | No text annotation | ||
| IL_6HCF_133 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_134 | Isolated non-canonical cWW with bulges | ||
| IL_6HCF_274 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_275 | No text annotation | ||
| IL_6HCF_276 | No text annotation | ||
| IL_6HCF_277 | No text annotation | ||
| IL_6HCF_278 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_280 | No text annotation | ||
| IL_6HCF_154 | No text annotation | ||
| IL_6HCF_155 | No text annotation | ||
| IL_6HCF_157 | Double sheared with non-canonical cWW | ||
| IL_6HCF_158 | No text annotation | ||
| IL_6HCF_159 | Isolated non-canonical cWW pair | ||
| IL_6HCF_284 | No text annotation | ||
| IL_6HCF_285 | No text annotation | ||
| IL_6HCF_165 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_287 | No text annotation | ||
| IL_6HCF_288 | Isolated non-canonical cWW pair | ||
| IL_6HCF_170 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_351 | Single bulged A | ||
| IL_6HCF_171 | No text annotation | ||
| IL_6HCF_174 | No text annotation | ||
| IL_6HCF_175 | No text annotation | ||
| IL_6HCF_289 | No text annotation | ||
| IL_6HCF_290 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_179 | Isolated non-canonical cWW pair | ||
| IL_6HCF_291 | No text annotation | ||
| IL_6HCF_180 | Single stack bend | ||
| IL_6HCF_292 | No text annotation | ||
| IL_6HCF_293 | No text annotation | ||
| IL_6HCF_191 | No text annotation | ||
| IL_6HCF_296 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_196 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6HCF_297 | No text annotation | ||
| IL_6HCF_207 | Other IL | ||
| IL_6HCF_299 | No text annotation | ||
| IL_6HCF_209 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_302 | No text annotation | ||
| IL_6HCF_303 | No text annotation | ||
| IL_6HCF_217 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_304 | Tandem non-canonical cWW pairs | ||
| IL_6HCF_221 | Double sheared with near cWW | ||
| IL_6HCF_306 | No text annotation | ||
| IL_6HCF_361 | No text annotation | ||
| IL_6HCF_224 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6HCF_044 | 1/52/111:112, 1/52/278:283, 1/52/304:330 | No text annotation | ||
| J3_6HCF_001 | 1/52/112:116, 1/52/155:160, 1/52/275:278 | No text annotation | ||
| J3_6HCF_045 | 1/52/196:201, 1/52/214:228, 1/52/240:244 | No text annotation | ||
| J3_6HCF_046 | 1/52/380:390, 1/52/401:421, 1/82/13:20 | No text annotation | ||
| J3_6HCF_047 | 1/52/451:455, 1/52/701:705, 1/52/1292:1296 | No text annotation | ||
| J3_6HCF_002 | 1/52/982:986, 1/52/1068:1074, 1/52/1236:1273 | No text annotation | ||
| J3_6HCF_024 | 1/52/982:986, 1/52/1068:1077, 1/52/1233:1273 | No text annotation | ||
| J3_6HCF_049 | 1/52/1530:1537, 1/52/1622:1624, 1/52/1640:1644 | No text annotation | ||
| J3_6HCF_050 | 1/52/1530:1537, 1/52/1622:1626, 1/52/1636:1644 | No text annotation | ||
| J3_6HCF_004 | 1/52/1545:1548, 1/52/1580:1585, 1/52/1608:1614 | No text annotation | ||
| J3_6HCF_028 | 1/52/1545:1548, 1/52/1580:1589, 1/52/1605:1614 | No text annotation | ||
| J3_6HCF_051 | 1/52/1721:1727, 1/52/1802:1806, 1/52/1832:1841 | No text annotation | ||
| J3_6HCF_052 | 1/52/1950:1977, 1/52/1989:2005, 1/52/2014:2033 | No text annotation | ||
| J3_6HCF_005 | 1/52/2392:2400, 1/52/2804:2808, 1/52/2818:2823 | No text annotation | ||
| J3_6HCF_053 | 1/52/2446:2456, 1/52/2465:2476, 1/52/2501:2514 | No text annotation | ||
| J3_6HCF_054 | 1/52/3936:3946, 1/52/4066:4078, 1/52/4168:4174 | No text annotation | ||
| J3_6HCF_006 | 1/52/4241:4243, 1/52/4267:4269, 1/52/4278:4283 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_6HCF_033 | 1/52/4241:4245, 1/52/4263:4269, 1/52/4278:4283 | No text annotation | ||
| J3_6HCF_055 | 1/52/4461:4466, 1/52/4491:4493, 1/52/4507:4515 | No text annotation | ||
| J3_6HCF_007 | 1/52/4462:4466, 1/52/4491:4494, 1/52/4506:4514 | No text annotation | ||
| J3_6HCF_035 | 1/52/4749:4754, 1/52/4879:4883, 1/52/4936:4951 | No text annotation | ||
| J3_6HCF_008 | 1/52/4968:4975, 1/52/4983:4991, 1/52/5060:5065 | No text annotation | ||
| J3_6HCF_056 | 1/72/9:14, 1/72/65:66, 1/72/109:110 | No text annotation | homologous J3_8OI5_025 J3_26985.1 | |
| J3_6HCF_057 | 1/82/44:45, 1/82/58:66, 1/82/92:99 | No text annotation | ||
| J3_6HCF_010 | 1/A1/40:41, 1/A1/481:487, 1/A1/512:514 | No text annotation | homologous J3_8P9A_068 J3_58657.1 | |
| J3_6HCF_011 | 1/A1/681:685, 1/A1/917:922, 1/A1/1022:1024 | No text annotation | ||
| J3_6HCF_012 | 1/A1/938:941, 1/A1/985:993, 1/A1/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_6HCF_013 | 1/A1/1091:1096, 1/A1/1136:1140, 1/A1/1147:1158 | No text annotation | ||
| J3_6HCF_039 | 1/A1/1214:1221, 1/A1/1645:1651, 1/A1/1673:1685 | No text annotation | ||
| J3_6HCF_040 | 1/A1/1223:1228, 1/A1/1530:1532, 1/A1/1638:1643 | No text annotation | ||
| J3_6HCF_014 | 1/A1/1225:1228, 1/A1/1530:1532, 1/A1/1638:1641 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_6HCF_058 | 1/A1/1237:1244, 1/A1/1255:1266, 1/A1/1516:1520 | No text annotation | homologous J3_8CRE_080 J3_88451.1 | |
| J3_6HCF_016 | 1/A1/1270:1277, 1/A1/1320:1324, 1/A1/1504:1512 | No text annotation | ||
| J3_6HCF_017 | 1/A1/1340:1345, 1/A1/1384:1390, 1/A1/1480:1486 | No text annotation | geometric J3_4LFB_007 J3_01343.1 | |
| J3_6HCF_059 | 1/A1/1340:1363, 1/A1/1375:1389, 1/A1/1481:1486 | No text annotation | ||
| J3_6HCF_018 | 1/A1/1349:1351, 1/A1/1360:1363, 1/A1/1375:1380 | No text annotation | ||
| J3_6HCF_043 | 1/A1/1391:1395, 1/A1/1450:1456, 1/A1/1470:1479 | No text annotation | ||
| J3_6HCF_019 | 1/A1/1532:1536, 1/A1/1597:1604, 1/A1/1635:1638 | No text annotation | homologous J3_4V88_041 NA | |
| J4_6HCF_015 | 1/23/7:10, 1/23/25:30, 1/23/40:49, 1/23/65:66 | No text annotation | ||
| J4_6HCF_016 | 1/52/712:713, 1/52/955:961, 1/52/971:982, 1/52/1273:1284 | No text annotation | ||
| J4_6HCF_017 | 1/52/1313:1314, 1/52/1329:1330, 1/52/2356:2357, 1/52/3864:3879 | No text annotation | ||
| J4_6HCF_004 | 1/52/2400:2410, 1/52/2434:2441, 1/52/2781:2791, 1/52/2800:2804 | No text annotation | ||
| J4_6HCF_018 | 1/52/2443:2445, 1/52/2515:2519, 1/52/2536:2539, 1/52/2777:2779 | No text annotation | ||
| J4_6HCF_019 | 1/52/2549:2555, 1/52/2572:2576, 1/52/2585:2593, 1/52/2752:2770 | No text annotation | ||
| J4_6HCF_020 | 1/52/2613:2619, 1/52/2637:2642, 1/52/2692:2698, 1/52/2718:2726 | No text annotation | ||
| J4_6HCF_021 | 1/52/2847:2863, 1/52/2887:2891, 1/52/3610:3626, 1/52/3835:3841 | No text annotation | ||
| J4_6HCF_022 | 1/52/3634:3638, 1/52/3650:3655, 1/52/3689:3694, 1/52/3821:3826 | No text annotation | ||
| J4_6HCF_023 | 1/52/3696:3703, 1/52/3749:3753, 1/52/3771:3792, 1/52/3808:3819 | No text annotation | ||
| J4_6HCF_024 | 1/52/4231:4237, 1/52/4287:4291, 1/52/4318:4319, 1/52/4328:4330 | No text annotation | ||
| J4_6HCF_013 | 1/52/4587:4592, 1/52/4618:4621, 1/52/4676:4678, 1/52/4712:4715 | No text annotation | ||
| J4_6HCF_025 | 1/A1/671:673, 1/A1/1032:1037, 1/A1/1078:1089, 1/A1/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J5_6HCF_006 | 1/52/1335:1340, 1/52/1516:1519, 1/52/1658:1662, 1/52/2287:2309, 1/52/2329:2351 | No text annotation | ||
| J5_6HCF_007 | 1/52/2365:2372, 1/52/2388:2399, 1/52/2805:2807, 1/52/2819:2829, 1/52/3856:3857 | No text annotation | ||
| J5_6HCF_008 | 1/52/3903:3910, 1/52/4392:4408, 1/52/4434:4453, 1/52/4528:4534, 1/52/4552:4557 | No text annotation | ||
| J5_6HCF_009 | 1/A1/30:36, 1/A1/519:527, 1/A1/559:565, 1/A1/585:595, 1/A1/641:644 | No text annotation | ||
| J5_6HCF_005 | 1/A1/123:130, 1/A1/182:185, 1/A1/214:220, 1/A1/302:312, 1/A1/337:341 | No text annotation | ||
| J6_6HCF_004 | 1/52/1352:1355, 1/52/1384:1388, 1/52/1395:1399, 1/52/1418:1429, 1/52/1455:1472, 1/52/1492:1504 | No text annotation | ||
| J6_6HCF_002 | 1/52/2400:2410, 1/52/2434:2445, 1/52/2515:2520, 1/52/2535:2539, 1/52/2777:2791, 1/52/2800:2804 | No text annotation | ||
| J6_6HCF_005 | 1/52/3913:3929, 1/52/4181:4191, 1/52/4204:4205, 1/52/4227:4230, 1/52/4331:4342, 1/52/4370:4389 | No text annotation | ||
| J6_6HCF_006 | 1/52/3915:3929, 1/52/4181:4191, 1/52/4204:4205, 1/52/4227:4230, 1/52/4331:4342, 1/52/4370:4388 | No text annotation | ||
| J7_6HCF_003 | 1/52/1666:1673, 1/52/1682:1686, 1/52/1851:1855, 1/52/1879:1884, 1/52/1895:1899, 1/52/2077:2085, 1/52/2272:2283 | No text annotation | ||
| J7_6HCF_004 | 1/A1/53:62, 1/A1/86:106, 1/A1/355:358, 1/A1/404:409, 1/A1/431:436, 1/A1/457:461, 1/A1/468:474 | No text annotation | ||
| J9_6HCF_001 | 1/52/16:27, 1/52/55:67, 1/52/74:78, 1/52/105:109, 1/52/332:339, 1/82/33:42, 1/82/101:106, 1/82/113:114, 1/82/136:141 | No text annotation | ||
| J9_6HCF_002 | 1/52/3903:3931, 1/52/4179:4191, 1/52/4204:4205, 1/52/4227:4230, 1/52/4331:4342, 1/52/4370:4408, 1/52/4434:4453, 1/52/4528:4534, 1/52/4552:4557 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6HCF_020 | No text annotation | ||
| J3_6HCF_021 | No text annotation | ||
| J3_6HCF_022 | No text annotation | ||
| J3_6HCF_023 | No text annotation | ||
| J3_6HCF_025 | No text annotation | ||
| J3_6HCF_048 | No text annotation | ||
| J3_6HCF_026 | No text annotation | ||
| J3_6HCF_027 | No text annotation | ||
| J3_6HCF_003 | No text annotation | ||
| J3_6HCF_029 | No text annotation | ||
| J3_6HCF_030 | No text annotation | ||
| J3_6HCF_031 | No text annotation | ||
| J3_6HCF_032 | No text annotation | ||
| J3_6HCF_034 | No text annotation | ||
| J3_6HCF_036 | No text annotation | ||
| J3_6HCF_009 | No text annotation | ||
| J3_6HCF_037 | No text annotation | ||
| J3_6HCF_038 | No text annotation | ||
| J3_6HCF_015 | No text annotation | ||
| J3_6HCF_041 | No text annotation | ||
| J3_6HCF_042 | No text annotation | ||
| J4_6HCF_001 | No text annotation | ||
| J4_6HCF_002 | No text annotation | ||
| J4_6HCF_003 | No text annotation | ||
| J4_6HCF_005 | No text annotation | ||
| J4_6HCF_006 | No text annotation | ||
| J4_6HCF_007 | No text annotation | ||
| J4_6HCF_008 | No text annotation | ||
| J4_6HCF_009 | No text annotation | ||
| J4_6HCF_010 | No text annotation | ||
| J4_6HCF_011 | No text annotation | ||
| J4_6HCF_012 | No text annotation | ||
| J4_6HCF_014 | No text annotation | ||
| J5_6HCF_001 | No text annotation | ||
| J5_6HCF_002 | No text annotation | ||
| J5_6HCF_003 | No text annotation | ||
| J5_6HCF_004 | No text annotation | ||
| J6_6HCF_001 | No text annotation | ||
| J6_6HCF_003 | No text annotation | ||
| J7_6HCF_001 | No text annotation | ||
| J7_6HCF_002 | No text annotation |
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