HL_6HCF_008

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

6HCF|1|52|U|209, 6HCF|1|52|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_008 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.2755

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6HCF|1|52|U|204
6HCF|1|52|C|205
6HCF|1|52|U|206
6HCF|1|52|G|207
6HCF|1|52|A|208
6HCF|1|52|U|209
6HCF|1|52|C|210
6HCF|1|52|G|211

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain Y3

Ribosomal protein L26

Chain e3

eL32