HL_6HCF_023

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUUCCAGUCCG

Length

12 nucleotides

Bulged bases

6HCF|1|52|C|1437, 6HCF|1|52|U|1438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|C|1436
6HCF|1|52|C|1437
6HCF|1|52|U|1438
6HCF|1|52|U|1440
6HCF|1|52|C|1441
6HCF|1|52|C|1442
6HCF|1|52|A|1443
6HCF|1|52|G|1444
6HCF|1|52|U|1445
6HCF|1|52|C|1446
6HCF|1|52|C|1447
6HCF|1|52|G|1448

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain F3

uL30

Chain Q3

eL18

Chain b3

eL29