HL_6HCF_028

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6HCF|1|52|C|1676, 6HCF|1|52|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_028 not in the Motif Atlas

Geometric match to HL_4V9F_026

Geometric discrepancy: 0.368

The information below is about HL_4V9F_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

6HCF|1|52|C|1675
6HCF|1|52|C|1676
6HCF|1|52|U|1677
6HCF|1|52|C|1678
6HCF|1|52|A|1679
6HCF|1|52|G|1680

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain a3

uL15

Chain b3

eL29

Chain o3

eL42