HL_6HCF_034
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGUAACAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCF_034 not in the Motif Atlas
- Homologous match to HL_5TBW_028
- Geometric discrepancy: 0.3416
- The information below is about HL_5TBW_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6HCF|1|52|G|2005
6HCF|1|52|U|2006
6HCF|1|52|G|2007
6HCF|1|52|U|2008
6HCF|1|52|A|2009
6HCF|1|52|A|2010
6HCF|1|52|C|2011
6HCF|1|52|A|2012
6HCF|1|52|A|2013
6HCF|1|52|C|2014
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain I3
- 60S ribosomal protein L10
- Chain j1
- eRF1(AAQ)
- Chain m3
- eL40
- Chain s3
- uL10
- Chain t3
- Ribosomal protein L12
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