HL_6HCF_035
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG
- Length
- 40 nucleotides
- Bulged bases
- 6HCF|1|52|C|2094, 6HCF|1|52|C|2099, 6HCF|1|52|G|2100, 6HCF|1|52|A|2101, 6HCF|1|52|U|2267, 6HCF|1|52|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|C|2087
6HCF|1|52|A|2088
6HCF|1|52|G|2089
6HCF|1|52|U|2090
6HCF|1|52|C|2091
6HCF|1|52|G|2092
6HCF|1|52|G|2093
6HCF|1|52|C|2094
6HCF|1|52|A|2095
6HCF|1|52|G|2096
6HCF|1|52|A|2097
6HCF|1|52|G|2098
6HCF|1|52|C|2099
6HCF|1|52|G|2100
6HCF|1|52|A|2101
6HCF|1|52|G|2102
6HCF|1|52|A|2103
6HCF|1|52|A|2104
6HCF|1|52|A|2105
6HCF|1|52|G|2106
6HCF|1|52|A|2107
6HCF|1|52|G|2108
6HCF|1|52|A|2109
6HCF|1|52|G|2110
6HCF|1|52|U|2111
6HCF|1|52|G|2112
6HCF|1|52|G|2113
6HCF|1|52|C|2258
6HCF|1|52|G|2259
6HCF|1|52|C|2260
6HCF|1|52|G|2261
6HCF|1|52|G|2262
6HCF|1|52|A|2263
6HCF|1|52|C|2264
6HCF|1|52|G|2265
6HCF|1|52|C|2266
6HCF|1|52|U|2267
6HCF|1|52|A|2268
6HCF|1|52|C|2269
6HCF|1|52|G|2270
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain C3
- uL4
- Chain E3
- 60S ribosomal protein L6
- Chain F3
- uL30
- Chain Q3
- eL18
- Chain b3
- eL29
- Chain e3
- eL32
- Chain r3
- eL28
Coloring options: