HL_6HCF_038
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGCAGUUG
- Length
- 9 nucleotides
- Bulged bases
- 6HCF|1|52|G|2421, 6HCF|1|52|U|2425
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCF_038 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.3513
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05426.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6HCF|1|52|C|2419
6HCF|1|52|A|2420
6HCF|1|52|G|2421
6HCF|1|52|C|2422
6HCF|1|52|A|2423
6HCF|1|52|G|2424
6HCF|1|52|U|2425
6HCF|1|52|U|2426
6HCF|1|52|G|2427
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain P3
- uL22
- Chain R3
- eL19
- Chain l3
- eL39
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