HL_6HCF_043

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGUAACG

Length

8 nucleotides

Bulged bases

6HCF|1|52|U|2580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_043 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2956

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

6HCF|1|52|C|2577
6HCF|1|52|G|2578
6HCF|1|52|G|2579
6HCF|1|52|U|2580
6HCF|1|52|A|2581
6HCF|1|52|A|2582
6HCF|1|52|C|2583
6HCF|1|52|G|2584

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain Z3

60S ribosomal protein L27

Chain g3

eL34