HL_6HCF_063

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_063 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.188

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6HCF|1|52|C|4270
6HCF|1|52|A|4271
6HCF|1|52|G|4272
6HCF|1|52|A|4273
6HCF|1|52|A|4274
6HCF|1|52|G|4275
6HCF|1|52|G|4276
6HCF|1|52|G|4277

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain I3

60S ribosomal protein L10

Chain T3

eL21