HL_6HCF_071

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_071 not in the Motif Atlas

Homologous match to HL_5TBW_065

Geometric discrepancy: 0.2032

The information below is about HL_5TBW_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6HCF|1|52|C|4603
6HCF|1|52|G|4604
6HCF|1|52|A|4605
6HCF|1|52|G|4606
6HCF|1|52|A|4607
6HCF|1|52|G|4608

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain H3

uL6

Chain j1

eRF1(AAQ)

Chain k1

ATP binding cassette subfamily E member 1

Chain m3

eL40