HL_6HCF_073

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6HCF|1|52|G|4694, 6HCF|1|52|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_073 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.145

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6HCF|1|52|C|4688
6HCF|1|52|U|4689
6HCF|1|52|G|4690
6HCF|1|52|A|4691
6HCF|1|52|A|4692
6HCF|1|52|C|4693
6HCF|1|52|G|4694
6HCF|1|52|C|4695
6HCF|1|52|C|4696
6HCF|1|52|U|4697
6HCF|1|52|C|4698
6HCF|1|52|U|4699
6HCF|1|52|A|4700
6HCF|1|52|A|4701
6HCF|1|52|G|4702

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain H3

uL6

Chain O3

uL13

Chain m3

eL40