HL_6HCF_074

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_074 not in the Motif Atlas

Geometric match to HL_3AL0_001

Geometric discrepancy: 0.3831

The information below is about HL_3AL0_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6HCF|1|52|C|4775
6HCF|1|52|G|4776
6HCF|1|52|C|4777
6HCF|1|52|C|4859
6HCF|1|52|G|4860

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain M3

Ribosomal protein L14

Chain O3

uL13