HL_6HCF_083

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGUUCCUCCC

Length

11 nucleotides

Bulged bases

6HCF|1|82|U|124, 6HCF|1|82|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|82|G|120
6HCF|1|82|G|121
6HCF|1|82|G|122
6HCF|1|82|U|123
6HCF|1|82|U|124
6HCF|1|82|C|125
6HCF|1|82|C|126
6HCF|1|82|U|127
6HCF|1|82|C|128
6HCF|1|82|C|129
6HCF|1|82|C|130

Current chains

Chain 82

5.8S ribosomal RNA

Nearby chains

Chain 52

Large subunit ribosomal RNA; LSU rRNA

Chain X3

uL23