HL_6HCF_091

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGCCUGAGAAACGGCU

Length

16 nucleotides

Bulged bases

6HCF|1|A1|A|448, 6HCF|1|A1|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|A1|A|439
6HCF|1|A1|G|440
6HCF|1|A1|C|441
6HCF|1|A1|C|442
6HCF|1|A1|U|443
6HCF|1|A1|G|444
6HCF|1|A1|A|445
6HCF|1|A1|G|446
6HCF|1|A1|A|447
6HCF|1|A1|A|448
6HCF|1|A1|A|449
6HCF|1|A1|C|450
6HCF|1|A1|G|451
6HCF|1|A1|G|452
6HCF|1|A1|C|453
6HCF|1|A1|U|454

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

eS4

Chain H1

40S ribosomal protein S6

Chain J1

eS8

Chain Z1

eS24