HL_6HCF_109

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGACCCCGGUCGG

Length

13 nucleotides

Bulged bases

6HCF|1|A1|G|1428

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|A1|C|1412
6HCF|1|A1|G|1413
6HCF|1|A1|A|1414
6HCF|1|A1|C|1415
6HCF|1|A1|C|1416
6HCF|1|A1|C|1417
6HCF|1|A1|C|1423
6HCF|1|A1|G|1424
6HCF|1|A1|G|1425
6HCF|1|A1|U|1426
6HCF|1|A1|C|1427
6HCF|1|A1|G|1428
6HCF|1|A1|G|1429

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain R1

Ribosomal protein S16

Chain U1

eS19