HL_6HCF_110

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_110 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.4379

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6HCF|1|A1|C|1460
6HCF|1|A1|G|1461
6HCF|1|A1|U|1462
6HCF|1|A1|U|1463
6HCF|1|A1|C|1464
6HCF|1|A1|A|1465
6HCF|1|A1|G|1466

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain S1

eS17

Chain h1

RACK1