HL_6HCF_122

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUGACGUGCGAAUCGG

Length

17 nucleotides

Bulged bases

6HCF|1|52|U|1591, 6HCF|1|52|U|1596, 6HCF|1|52|A|1600, 6HCF|1|52|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|C|1589
6HCF|1|52|C|1590
6HCF|1|52|U|1591
6HCF|1|52|G|1592
6HCF|1|52|A|1593
6HCF|1|52|C|1594
6HCF|1|52|G|1595
6HCF|1|52|U|1596
6HCF|1|52|G|1597
6HCF|1|52|C|1598
6HCF|1|52|G|1599
6HCF|1|52|A|1600
6HCF|1|52|A|1601
6HCF|1|52|U|1602
6HCF|1|52|C|1603
6HCF|1|52|G|1604
6HCF|1|52|G|1605

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 1

nascent chain

Chain B3

uL3

Chain P3

uL22

Chain j3

Ribosomal protein L37