HL_6HCF_124

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGGCCGAAACGAUCUC

Length

17 nucleotides

Bulged bases

6HCF|1|52|C|1768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|1758
6HCF|1|52|G|1759
6HCF|1|52|G|1760
6HCF|1|52|G|1761
6HCF|1|52|C|1762
6HCF|1|52|C|1763
6HCF|1|52|G|1764
6HCF|1|52|A|1765
6HCF|1|52|A|1766
6HCF|1|52|A|1767
6HCF|1|52|C|1768
6HCF|1|52|G|1769
6HCF|1|52|A|1770
6HCF|1|52|U|1771
6HCF|1|52|C|1772
6HCF|1|52|U|1773
6HCF|1|52|C|1774

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain I3

60S ribosomal protein L10

Chain T1

uS13