HL_6HCF_128

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGAUGGCCUCCGUUGC

Length

17 nucleotides

Bulged bases

6HCF|1|52|U|2485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|2481
6HCF|1|52|C|2482
6HCF|1|52|G|2483
6HCF|1|52|A|2484
6HCF|1|52|U|2485
6HCF|1|52|G|2486
6HCF|1|52|G|2487
6HCF|1|52|C|2488
6HCF|1|52|C|2489
6HCF|1|52|U|2490
6HCF|1|52|C|2491
6HCF|1|52|C|2492
6HCF|1|52|G|2493
6HCF|1|52|U|2494
6HCF|1|52|U|2495
6HCF|1|52|G|2496
6HCF|1|52|C|2497

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 82

5.8S ribosomal RNA; 5.8S rRNA

Chain X3

uL23