HL_6HCF_132

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCGCAGCAGG

Length

10 nucleotides

Bulged bases

6HCF|1|52|C|2794, 6HCF|1|52|G|2796, 6HCF|1|52|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_132 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3785

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

6HCF|1|52|C|2791
6HCF|1|52|C|2792
6HCF|1|52|G|2793
6HCF|1|52|C|2794
6HCF|1|52|A|2795
6HCF|1|52|G|2796
6HCF|1|52|C|2797
6HCF|1|52|A|2798
6HCF|1|52|G|2799
6HCF|1|52|G|2800

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 1

nascent chain

Chain C3

uL4

Chain P3

uL22

Chain j3

Ribosomal protein L37

Chain l3

eL39