HL_6HCF_135

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUCUAAUUAGUG

Length

13 nucleotides

Bulged bases

6HCF|1|52|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|C|3794
6HCF|1|52|A|3795
6HCF|1|52|U|3796
6HCF|1|52|C|3797
6HCF|1|52|U|3798
6HCF|1|52|A|3799
6HCF|1|52|A|3800
6HCF|1|52|U|3801
6HCF|1|52|U|3802
6HCF|1|52|A|3803
6HCF|1|52|G|3804
6HCF|1|52|U|3805
6HCF|1|52|G|3806

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain V3

Ribosomal protein L23

Chain j1

eRF1(AAQ)

Chain n3

eL41