HL_6HCF_137

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACUGGGGCGGUAC

Length

14 nucleotides

Bulged bases

6HCF|1|52|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|4191
6HCF|1|52|A|4192
6HCF|1|52|C|4193
6HCF|1|52|U|4194
6HCF|1|52|G|4195
6HCF|1|52|G|4196
6HCF|1|52|G|4197
6HCF|1|52|G|4198
6HCF|1|52|C|4199
6HCF|1|52|G|4200
6HCF|1|52|G|4201
6HCF|1|52|U|4202
6HCF|1|52|A|4203
6HCF|1|52|C|4204

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain I3

60S ribosomal protein L10

Chain T3

eL21

Chain b3

eL29

Chain o3

eL42