HL_6HCF_138

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUGUCAAACGGUAACGCAGG

Length

21 nucleotides

Bulged bases

6HCF|1|52|A|4214, 6HCF|1|52|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|C|4206
6HCF|1|52|C|4207
6HCF|1|52|U|4208
6HCF|1|52|G|4209
6HCF|1|52|U|4210
6HCF|1|52|C|4211
6HCF|1|52|A|4212
6HCF|1|52|A|4213
6HCF|1|52|A|4214
6HCF|1|52|C|4215
6HCF|1|52|G|4216
6HCF|1|52|G|4217
6HCF|1|52|U|4218
6HCF|1|52|A|4219
6HCF|1|52|A|4220
6HCF|1|52|C|4221
6HCF|1|52|G|4222
6HCF|1|52|C|4223
6HCF|1|52|A|4224
6HCF|1|52|G|4225
6HCF|1|52|G|4226

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain I3

60S ribosomal protein L10

Chain T3

eL21

Chain b3

eL29