HL_6HCF_142

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAGCGUUCAUAGCGACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|C|4412
6HCF|1|52|C|4413
6HCF|1|52|A|4414
6HCF|1|52|A|4415
6HCF|1|52|G|4416
6HCF|1|52|C|4417
6HCF|1|52|G|4418
6HCF|1|52|U|4419
6HCF|1|52|U|4420
6HCF|1|52|C|4421
6HCF|1|52|A|4422
6HCF|1|52|U|4423
6HCF|1|52|A|4424
6HCF|1|52|G|4425
6HCF|1|52|C|4426
6HCF|1|52|G|4427
6HCF|1|52|A|4428
6HCF|1|52|C|4429
6HCF|1|52|G|4430

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain I3

60S ribosomal protein L10

Chain j1

eRF1(AAQ)

Chain m3

eL40