HL_6HCF_150

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCCACUUUAAAUCCUUUAA

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|A1|U|566
6HCF|1|A1|C|567
6HCF|1|A1|C|568
6HCF|1|A1|A|569
6HCF|1|A1|C|570
6HCF|1|A1|U|571
6HCF|1|A1|U|572
6HCF|1|A1|U|573
6HCF|1|A1|A|574
6HCF|1|A1|A|575
6HCF|1|A1|A|576
6HCF|1|A1|U|577
6HCF|1|A1|C|578
6HCF|1|A1|C|579
6HCF|1|A1|U|580
6HCF|1|A1|U|581
6HCF|1|A1|U|582
6HCF|1|A1|A|583
6HCF|1|A1|A|584

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain K1

Ribosomal protein S9 (Predicted)

Chain Z1

eS24