HL_6HCF_155

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGUUAAUUCCG

Length

13 nucleotides

Bulged bases

6HCF|1|A1|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|A1|C|1363
6HCF|1|A1|U|1364
6HCF|1|A1|G|1365
6HCF|1|A1|G|1366
6HCF|1|A1|U|1367
6HCF|1|A1|U|1368
6HCF|1|A1|A|1369
6HCF|1|A1|A|1370
6HCF|1|A1|U|1371
6HCF|1|A1|U|1372
6HCF|1|A1|C|1373
6HCF|1|A1|C|1374
6HCF|1|A1|G|1375

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain S1

eS17

Chain b1

eS26