HL_6HCF_156

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUUGCAAUUAUUC

Length

14 nucleotides

Bulged bases

6HCF|1|A1|U|1621, 6HCF|1|A1|U|1622, 6HCF|1|A1|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|A1|G|1613
6HCF|1|A1|A|1614
6HCF|1|A1|U|1615
6HCF|1|A1|U|1616
6HCF|1|A1|G|1617
6HCF|1|A1|C|1618
6HCF|1|A1|A|1619
6HCF|1|A1|A|1620
6HCF|1|A1|U|1621
6HCF|1|A1|U|1622
6HCF|1|A1|A|1623
6HCF|1|A1|U|1624
6HCF|1|A1|U|1625
6HCF|1|A1|C|1626

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain Q1

uS19

Chain T1

uS13

Chain U1

eS19

Chain e1

uS14