HL_6HCF_157
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 6HCF|1|52|A|39, 6HCF|1|52|A|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCF_157 not in the Motif Atlas
- Homologous match to HL_8CRE_001
- Geometric discrepancy: 0.2038
- The information below is about HL_8CRE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6HCF|1|52|U|37
6HCF|1|52|A|38
6HCF|1|52|A|39
6HCF|1|52|G|40
6HCF|1|52|C|41
6HCF|1|52|A|42
6HCF|1|52|U|43
6HCF|1|52|A|44
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain a3
- uL15
- Chain o3
- eL42
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