HL_6HCF_161

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6HCF|1|52|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_161 not in the Motif Atlas

Homologous match to HL_8CRE_013

Geometric discrepancy: 0.1644

The information below is about HL_8CRE_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6HCF|1|52|U|1317
6HCF|1|52|C|1318
6HCF|1|52|U|1319
6HCF|1|52|U|1320
6HCF|1|52|G|1321
6HCF|1|52|A|1322
6HCF|1|52|A|1323
6HCF|1|52|A|1324
6HCF|1|52|C|1325
6HCF|1|52|A|1326

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain a3

uL15

Chain e3

eL32