HL_6HCF_171

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_171 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.2505

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6HCF|1|52|A|3724
6HCF|1|52|G|3725
6HCF|1|52|A|3726
6HCF|1|52|A|3727
6HCF|1|52|A|3728
6HCF|1|52|U|3729

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain i3

60S ribosomal protein L36

Chain o3

eL42

Chain u3

uL1