HL_6HCF_176
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 6HCF|1|A1|C|450, 6HCF|1|A1|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCF_176 not in the Motif Atlas
- Homologous match to HL_8CRE_200
- Geometric discrepancy: 0.1609
- The information below is about HL_8CRE_200
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6HCF|1|A1|C|441
6HCF|1|A1|C|442
6HCF|1|A1|U|443
6HCF|1|A1|G|444
6HCF|1|A1|A|445
6HCF|1|A1|G|446
6HCF|1|A1|A|447
6HCF|1|A1|A|448
6HCF|1|A1|A|449
6HCF|1|A1|C|450
6HCF|1|A1|G|451
6HCF|1|A1|G|452
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain F1
- eS4
- Chain H1
- 40S ribosomal protein S6
- Chain J1
- eS8
- Chain Z1
- eS24
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