HL_6HCF_179

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6HCF|1|A1|U|1300, 6HCF|1|A1|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_179 not in the Motif Atlas

Homologous match to HL_8CRE_217

Geometric discrepancy: 0.2657

The information below is about HL_8CRE_217

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6HCF|1|A1|A|1295
6HCF|1|A1|U|1296
6HCF|1|A1|U|1297
6HCF|1|A1|G|1298
6HCF|1|A1|A|1299
6HCF|1|A1|U|1300
6HCF|1|A1|A|1301
6HCF|1|A1|G|1302
6HCF|1|A1|C|1303
6HCF|1|A1|U|1304

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain Q1

uS19

Chain e1

uS14

Chain g1

Ribosomal protein S27a