HL_6HCJ_002

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_002 not in the Motif Atlas

Homologous match to HL_6UFG_007

Geometric discrepancy: 0.2754

The information below is about HL_6UFG_007

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6HCJ|1|33|G|30
6HCJ|1|33|C|31
6HCJ|1|33|C|32
6HCJ|1|33|C|33
6HCJ|1|33|A|34
6HCJ|1|33|U|35
6HCJ|1|33|A|36
6HCJ|1|33|A|37
6HCJ|1|33|C|38

Current chains

Chain 33

P/E tRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain R2

Ribosomal protein S16

Chain v3

mRNA