6HCJ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6HCJ_119 | 1/33/29:39 | No text annotation | homologous HL_4WZD_209 NA | |
| HL_6HCJ_002 | 1/33/30:38 | tRNA anticodon loop | homologous HL_6UFG_007 NA | |
| HL_6HCJ_004 | 1/51/30:52 | No text annotation | ||
| HL_6HCJ_005 | 1/51/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6HCJ_006 | 1/51/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_6HCJ_008 | 1/51/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6HCJ_009 | 1/51/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_6HCJ_010 | 1/51/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_6HCJ_159 | 1/51/289:298 | T-loop related | homologous HL_8CRE_008 NA | |
| HL_6HCJ_012 | 1/51/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_6HCJ_013 | 1/51/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6HCJ_160 | 1/51/393:398 | GNRA | homologous HL_8CRE_011 NA | |
| HL_6HCJ_017 | 1/51/962:970 | No text annotation | ||
| HL_6HCJ_162 | 1/51/989:1065 | No text annotation | ||
| HL_6HCJ_163 | 1/51/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_013 NA | |
| HL_6HCJ_127 | 1/51/1357:1382 | No text annotation | ||
| HL_6HCJ_021 | 1/51/1361:1376 | No text annotation | ||
| HL_6HCJ_023 | 1/51/1431:1453 | No text annotation | ||
| HL_6HCJ_165 | 1/51/1479:1486 | No text annotation | homologous HL_8CRE_017 NA | |
| HL_6HCJ_025 | 1/51/1559:1568 | No text annotation | ||
| HL_6HCJ_166 | 1/51/1593:1602 | No text annotation | homologous HL_8CRE_019 NA | |
| HL_6HCJ_027 | 1/51/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6HCJ_028 | 1/51/1675:1680 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_6HCJ_030 | 1/51/1814:1824 | No text annotation | ||
| HL_6HCJ_167 | 1/51/1858:1876 | No text annotation | ||
| HL_6HCJ_031 | 1/51/1864:1870 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6HCJ_032 | 1/51/1886:1893 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6HCJ_034 | 1/51/2087:2270 | No text annotation | ||
| HL_6HCJ_035 | 1/51/2317:2322 | GNRA | homologous HL_5TBW_030 NA | |
| HL_6HCJ_168 | 1/51/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_030 NA | |
| HL_6HCJ_037 | 1/51/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_6HCJ_038 | 1/51/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6HCJ_040 | 1/51/2521:2534 | No text annotation | ||
| HL_6HCJ_042 | 1/51/2578:2583 | GNRA | homologous HL_5TBW_036 NA | |
| HL_6HCJ_043 | 1/51/2624:2632 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_6HCJ_044 | 1/51/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_6HCJ_045 | 1/51/2704:2712 | No text annotation | ||
| HL_6HCJ_046 | 1/51/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6HCJ_047 | 1/51/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6HCJ_169 | 1/51/2867:2883 | No text annotation | ||
| HL_6HCJ_048 | 1/51/2872:2877 | UNCG | homologous HL_5TBW_043 NA | |
| HL_6HCJ_050 | 1/51/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6HCJ_051 | 1/51/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6HCJ_171 | 1/51/3724:3729 | GNRA | homologous HL_8P9A_159 HL_34789.1 | |
| HL_6HCJ_053 | 1/51/3795:3805 | No text annotation | geometric HL_7VTI_001 NA | |
| HL_6HCJ_054 | 1/51/3839:3843 | No text annotation | ||
| HL_6HCJ_136 | 1/51/3869:3886 | No text annotation | ||
| HL_6HCJ_055 | 1/51/3873:3882 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_6HCJ_137 | 1/51/4191:4204 | No text annotation | ||
| HL_6HCJ_058 | 1/51/4192:4202 | No text annotation | ||
| HL_6HCJ_059 | 1/51/4208:4224 | No text annotation | ||
| HL_6HCJ_060 | 1/51/4250:4258 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_6HCJ_061 | 1/51/4270:4277 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_6HCJ_062 | 1/51/4301:4309 | No text annotation | homologous HL_5TBW_058 NA | |
| HL_6HCJ_063 | 1/51/4319:4328 | No text annotation | ||
| HL_6HCJ_172 | 1/51/4347:4365 | No text annotation | ||
| HL_6HCJ_064 | 1/51/4352:4362 | No text annotation | geometric HL_2ZZM_002 NA | |
| HL_6HCJ_139 | 1/51/4412:4430 | No text annotation | ||
| HL_6HCJ_065 | 1/51/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6HCJ_066 | 1/51/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6HCJ_067 | 1/51/4497:4503 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6HCJ_068 | 1/51/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6HCJ_069 | 1/51/4603:4608 | GNRA | geometric HL_5J7L_004 NA | |
| HL_6HCJ_070 | 1/51/4646:4651 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_6HCJ_071 | 1/51/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6HCJ_073 | 1/51/4906:4915 | No text annotation | ||
| HL_6HCJ_074 | 1/51/4975:4983 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_6HCJ_076 | 1/71/32:45 | No text annotation | ||
| HL_6HCJ_173 | 1/71/71:104 | No text annotation | ||
| HL_6HCJ_077 | 1/71/85:92 | GNRA with extra cWW | geometric HL_7A0S_056 HL_45359.1 | |
| HL_6HCJ_078 | 1/81/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_17803.1 | |
| HL_6HCJ_142 | 1/81/50:75 | No text annotation | ||
| HL_6HCJ_080 | 1/81/106:113 | No text annotation | geometric HL_2Y9H_005 HL_51020.1 | |
| HL_6HCJ_174 | 1/A2/7:17 | No text annotation | homologous HL_8CRE_191 HL_31940.1 | |
| HL_6HCJ_087 | 1/A2/288:295 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_6HCJ_176 | 1/A2/377:387 | No text annotation | ||
| HL_6HCJ_090 | 1/A2/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6HCJ_147 | 1/A2/437:456 | No text annotation | ||
| HL_6HCJ_091 | 1/A2/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6HCJ_092 | 1/A2/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_6HCJ_093 | 1/A2/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6HCJ_149 | 1/A2/563:592 | No text annotation | ||
| HL_6HCJ_095 | 1/A2/565:585 | No text annotation | ||
| HL_6HCJ_096 | 1/A2/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6HCJ_099 | 1/A2/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6HCJ_100 | 1/A2/994:999 | GNRA | geometric HL_1G1X_005 NA | |
| HL_6HCJ_152 | 1/A2/1047:1071 | No text annotation | ||
| HL_6HCJ_101 | 1/A2/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6HCJ_103 | 1/A2/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_6HCJ_104 | 1/A2/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_6HCJ_105 | 1/A2/1245:1254 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_6HCJ_154 | 1/A2/1290:1309 | No text annotation | ||
| HL_6HCJ_106 | 1/A2/1294:1306 | No text annotation | ||
| HL_6HCJ_155 | 1/A2/1363:1375 | No text annotation | ||
| HL_6HCJ_112 | 1/A2/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6HCJ_113 | 1/A2/1656:1668 | No text annotation | ||
| HL_6HCJ_115 | 1/A2/1847:1852 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_6HCJ_180 | 1/q3/31:39 | tRNA anticodon loop | homologous HL_5IBB_210 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6HCJ_001 | No text annotation | ||
| HL_6HCJ_003 | T-loop with 2 stacked bulged bases | ||
| HL_6HCJ_120 | No text annotation | ||
| HL_6HCJ_121 | No text annotation | ||
| HL_6HCJ_007 | No text annotation | ||
| HL_6HCJ_122 | No text annotation | ||
| HL_6HCJ_123 | No text annotation | ||
| HL_6HCJ_011 | No text annotation | ||
| HL_6HCJ_124 | No text annotation | ||
| HL_6HCJ_014 | No text annotation | ||
| HL_6HCJ_015 | No text annotation | ||
| HL_6HCJ_125 | No text annotation | ||
| HL_6HCJ_126 | No text annotation | ||
| HL_6HCJ_161 | No text annotation | ||
| HL_6HCJ_016 | No text annotation | ||
| HL_6HCJ_018 | No text annotation | ||
| HL_6HCJ_019 | No text annotation | ||
| HL_6HCJ_020 | No text annotation | ||
| HL_6HCJ_164 | No text annotation | ||
| HL_6HCJ_022 | No text annotation | ||
| HL_6HCJ_128 | No text annotation | ||
| HL_6HCJ_024 | No text annotation | ||
| HL_6HCJ_129 | No text annotation | ||
| HL_6HCJ_026 | No text annotation | ||
| HL_6HCJ_029 | tRNA D-loop | ||
| HL_6HCJ_130 | No text annotation | ||
| HL_6HCJ_131 | No text annotation | ||
| HL_6HCJ_033 | GNRA wlth tandem sheared | ||
| HL_6HCJ_036 | No text annotation | ||
| HL_6HCJ_039 | No text annotation | ||
| HL_6HCJ_041 | No text annotation | ||
| HL_6HCJ_132 | tRNA D-loop | ||
| HL_6HCJ_133 | No text annotation | ||
| HL_6HCJ_134 | No text annotation | ||
| HL_6HCJ_049 | No text annotation | ||
| HL_6HCJ_170 | No text annotation | ||
| HL_6HCJ_052 | GNRA with extra cWW | ||
| HL_6HCJ_135 | tRNA D-loop | ||
| HL_6HCJ_056 | No text annotation | ||
| HL_6HCJ_057 | No text annotation | ||
| HL_6HCJ_138 | No text annotation | ||
| HL_6HCJ_072 | No text annotation | ||
| HL_6HCJ_075 | No text annotation | ||
| HL_6HCJ_140 | No text annotation | ||
| HL_6HCJ_141 | No text annotation | ||
| HL_6HCJ_079 | No text annotation | ||
| HL_6HCJ_081 | No text annotation | ||
| HL_6HCJ_143 | No text annotation | ||
| HL_6HCJ_082 | No text annotation | ||
| HL_6HCJ_144 | No text annotation | ||
| HL_6HCJ_175 | No text annotation | ||
| HL_6HCJ_083 | No text annotation | ||
| HL_6HCJ_145 | No text annotation | ||
| HL_6HCJ_084 | No text annotation | ||
| HL_6HCJ_146 | No text annotation | ||
| HL_6HCJ_085 | No text annotation | ||
| HL_6HCJ_086 | No text annotation | ||
| HL_6HCJ_088 | No text annotation | ||
| HL_6HCJ_089 | No text annotation | ||
| HL_6HCJ_148 | No text annotation | ||
| HL_6HCJ_094 | GNRA with extra cWW | ||
| HL_6HCJ_177 | No text annotation | ||
| HL_6HCJ_150 | No text annotation | ||
| HL_6HCJ_097 | No text annotation | ||
| HL_6HCJ_098 | No text annotation | ||
| HL_6HCJ_151 | No text annotation | ||
| HL_6HCJ_102 | No text annotation | ||
| HL_6HCJ_153 | No text annotation | ||
| HL_6HCJ_178 | No text annotation | ||
| HL_6HCJ_107 | T-loop with 1 bulged base | ||
| HL_6HCJ_179 | GNRA | ||
| HL_6HCJ_108 | No text annotation | ||
| HL_6HCJ_109 | No text annotation | ||
| HL_6HCJ_110 | GNRA | ||
| HL_6HCJ_156 | No text annotation | ||
| HL_6HCJ_111 | GNRA | ||
| HL_6HCJ_114 | No text annotation | ||
| HL_6HCJ_116 | No text annotation | ||
| HL_6HCJ_157 | No text annotation | ||
| HL_6HCJ_117 | No text annotation | ||
| HL_6HCJ_158 | No text annotation | ||
| HL_6HCJ_118 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6HCJ_001 | 1/51/11:14, 1/81/143:145 | Isolated cWH basepair | geometric IL_2H1M_003 IL_10892.1 | |
| IL_6HCJ_002 | 1/51/16:18, 1/81/139:141 | Isolated cWH basepair | geometric IL_4J50_001 IL_10892.1 | |
| IL_6HCJ_003 | 1/51/81:88, 1/51/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_6HCJ_297 | 1/51/118:126, 1/51/142:153 | No text annotation | ||
| IL_6HCJ_005 | 1/51/121:122, 1/51/147:152 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_6HCJ_298 | 1/51/121:126, 1/51/142:152 | No text annotation | ||
| IL_6HCJ_007 | 1/51/168:174, 1/51/262:267 | No text annotation | ||
| IL_6HCJ_008 | 1/51/174:177, 1/51/260:262 | No text annotation | geometric IL_4V9F_053 IL_86407.1 | |
| IL_6HCJ_012 | 1/51/195:196, 1/51/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_6HCJ_014 | 1/51/339:342, 1/81/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_6HCJ_299 | 1/51/345:379, 1/81/21:29 | No text annotation | ||
| IL_6HCJ_015 | 1/51/348:350, 1/81/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6HCJ_016 | 1/51/387:390, 1/51/401:414 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_6HCJ_300 | 1/51/423:427, 1/81/8:11 | No text annotation | ||
| IL_6HCJ_017 | 1/51/425:427, 1/81/8:9 | Single stack bend | geometric IL_5J7L_044 NA | |
| IL_6HCJ_018 | 1/51/427:428, 1/81/6:8 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6HCJ_019 | 1/51/443:446, 1/51/1300:1304 | No text annotation | ||
| IL_6HCJ_303 | 1/51/494:515, 1/51/646:660 | No text annotation | ||
| IL_6HCJ_026 | 1/51/508:510, 1/51/649:650 | Single bulged A | geometric IL_4V88_409 NA | |
| IL_6HCJ_027 | 1/51/709:710, 1/51/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_28408.1 | |
| IL_6HCJ_028 | 1/51/723:725, 1/51/941:945 | No text annotation | ||
| IL_6HCJ_304 | 1/51/726:731, 1/51/938:940 | No text annotation | ||
| IL_6HCJ_305 | 1/51/726:739, 1/51/923:940 | No text annotation | ||
| IL_6HCJ_029 | 1/51/727:731, 1/51/938:939 | No text annotation | ||
| IL_6HCJ_030 | 1/51/731:737, 1/51/927:938 | No text annotation | ||
| IL_6HCJ_306 | 1/51/731:739, 1/51/923:938 | No text annotation | ||
| IL_6HCJ_031 | 1/51/737:739, 1/51/923:927 | No text annotation | ||
| IL_6HCJ_307 | 1/51/744:752, 1/51/911:920 | No text annotation | ||
| IL_6HCJ_033 | 1/51/1074:1077, 1/51/1233:1236 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_6HCJ_308 | 1/51/1074:1084, 1/51/1213:1236 | No text annotation | ||
| IL_6HCJ_035 | 1/51/1086:1088, 1/51/1208:1211 | Isolated non-canonical cWW pair | geometric IL_5MSF_001 IL_01003.1 | |
| IL_6HCJ_309 | 1/51/1086:1094, 1/51/1202:1211 | No text annotation | ||
| IL_6HCJ_037 | 1/51/1173:1177, 1/51/1184:1188 | No text annotation | ||
| IL_6HCJ_227 | 1/51/1173:1178, 1/51/1183:1188 | No text annotation | ||
| IL_6HCJ_038 | 1/51/1357:1360, 1/51/1379:1382 | No text annotation | ||
| IL_6HCJ_039 | 1/51/1360:1361, 1/51/1376:1379 | Major groove intercalation | geometric IL_1U9S_003 NA | |
| IL_6HCJ_040 | 1/51/1425:1431, 1/51/1453:1460 | No text annotation | ||
| IL_6HCJ_041 | 1/51/1467:1468, 1/51/1496:1498 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_6HCJ_042 | 1/51/1469:1472, 1/51/1493:1495 | No text annotation | geometric IL_4N0T_004 IL_32983.1 | |
| IL_6HCJ_043 | 1/51/1472:1474, 1/51/1490:1493 | No text annotation | geometric IL_4N0T_004 IL_32983.1 | |
| IL_6HCJ_229 | 1/51/1472:1476, 1/51/1489:1493 | No text annotation | ||
| IL_6HCJ_044 | 1/51/1474:1476, 1/51/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_6HCJ_045 | 1/51/1520:1522, 1/51/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_6HCJ_046 | 1/51/1522:1526, 1/51/1648:1655 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_6HCJ_311 | 1/51/1541:1592, 1/51/1603:1618 | No text annotation | ||
| IL_6HCJ_047 | 1/51/1550:1551, 1/51/1576:1578 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_6HCJ_048 | 1/51/1551:1558, 1/51/1569:1576 | No text annotation | ||
| IL_6HCJ_049 | 1/51/1585:1590, 1/51/1605:1608 | No text annotation | ||
| IL_6HCJ_050 | 1/51/1624:1626, 1/51/1636:1640 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_6HCJ_051 | 1/51/1686:1688, 1/51/1848:1851 | No text annotation | ||
| IL_6HCJ_052 | 1/51/1694:1721, 1/51/1841:1842 | No text annotation | ||
| IL_6HCJ_312 | 1/51/1723:1725, 1/51/1838:1839 | No text annotation | homologous IL_8CRE_040 NA | |
| IL_6HCJ_054 | 1/51/1732:1739, 1/51/1789:1797 | No text annotation | ||
| IL_6HCJ_055 | 1/51/1739:1745, 1/51/1785:1789 | No text annotation | geometric IL_4V9F_035 IL_38603.1 | |
| IL_6HCJ_056 | 1/51/1745:1751, 1/51/1779:1785 | No text annotation | ||
| IL_6HCJ_313 | 1/51/1753:1756, 1/51/1776:1777 | No text annotation | ||
| IL_6HCJ_058 | 1/51/1857:1861, 1/51/1873:1877 | No text annotation | ||
| IL_6HCJ_060 | 1/51/1904:1909, 1/51/2067:2072 | UAA/GAN with extra cWW | geometric IL_4WF9_104 IL_91079.1 | |
| IL_6HCJ_314 | 1/51/1905:1912, 1/51/2051:2071 | No text annotation | ||
| IL_6HCJ_061 | 1/51/1909:1918, 1/51/2064:2067 | Tandem non-canonical cWW pairs | geometric IL_7R9G_002 NA | |
| IL_6HCJ_233 | 1/51/1914:1944, 1/51/2038:2049 | No text annotation | ||
| IL_6HCJ_062 | 1/51/1918:1920, 1/51/2063:2064 | No text annotation | ||
| IL_6HCJ_063 | 1/51/1920:1922, 1/51/2062:2063 | No text annotation | ||
| IL_6HCJ_064 | 1/51/1926:1944, 1/51/2038:2058 | No text annotation | ||
| IL_6HCJ_315 | 1/51/1946:1948, 1/51/2035:2036 | Single bulged U | homologous IL_8P9A_281 IL_97561.1 | |
| IL_6HCJ_316 | 1/51/1955:2005, 1/51/2014:2028 | No text annotation | ||
| IL_6HCJ_067 | 1/51/2083:2085, 1/51/2272:2273 | No text annotation | ||
| IL_6HCJ_236 | 1/51/2294:2301, 1/51/2334:2340 | No text annotation | ||
| IL_6HCJ_068 | 1/51/2299:2301, 1/51/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6HCJ_317 | 1/51/2301:2314, 1/51/2325:2334 | No text annotation | ||
| IL_6HCJ_069 | 1/51/2302:2309, 1/51/2329:2333 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_6HCJ_070 | 1/51/2311:2314, 1/51/2325:2327 | Isolated non-canonical cWW pair | homologous IL_8C3A_064 NA | |
| IL_6HCJ_071 | 1/51/2357:2364, 1/51/3858:3864 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6HCJ_318 | 1/51/2415:2419, 1/51/2427:2429 | C-loop | geometric IL_7A0S_047 IL_06671.1 | |
| IL_6HCJ_073 | 1/51/2446:2450, 1/51/2509:2514 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_6HCJ_319 | 1/51/2542:2547, 1/51/2772:2774 | No text annotation | ||
| IL_6HCJ_241 | 1/51/2595:2602, 1/51/2737:2750 | No text annotation | ||
| IL_6HCJ_075 | 1/51/2613:2614, 1/51/2724:2726 | Single bulged A | geometric IL_7A0S_012 IL_14190.1 | |
| IL_6HCJ_320 | 1/51/2613:2615, 1/51/2722:2726 | No text annotation | geometric IL_6ZDU_001 NA | |
| IL_6HCJ_076 | 1/51/2614:2616, 1/51/2721:2724 | Other IL | geometric IL_5TBW_064 NA | |
| IL_6HCJ_077 | 1/51/2645:2648, 1/51/2685:2689 | tSH-tHW | geometric IL_7RQB_011 NA | |
| IL_6HCJ_243 | 1/51/2650:2662, 1/51/2672:2683 | No text annotation | ||
| IL_6HCJ_078 | 1/51/2651:2653, 1/51/2681:2682 | Single bulged G | geometric IL_3NDB_004 NA | |
| IL_6HCJ_079 | 1/51/2654:2662, 1/51/2672:2680 | No text annotation | ||
| IL_6HCJ_080 | 1/51/2831:2838, 1/51/3850:3854 | No text annotation | ||
| IL_6HCJ_321 | 1/51/2832:2846, 1/51/3842:3853 | No text annotation | ||
| IL_6HCJ_245 | 1/51/2846:2855, 1/51/3837:3842 | No text annotation | ||
| IL_6HCJ_081 | 1/51/2867:2872, 1/51/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_5TBW_078 NA | |
| IL_6HCJ_082 | 1/51/2889:2891, 1/51/3610:3612 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
| IL_6HCJ_083 | 1/51/2896:2897, 1/51/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6HCJ_084 | 1/51/3632:3633, 1/51/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6HCJ_085 | 1/51/3660:3665, 1/51/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6HCJ_086 | 1/51/3699:3708, 1/51/3742:3751 | No text annotation | ||
| IL_6HCJ_087 | 1/51/3708:3710, 1/51/3741:3742 | Single stack bend | geometric IL_5J7L_044 NA | |
| IL_6HCJ_088 | 1/51/3710:3714, 1/51/3739:3741 | No text annotation | homologous IL_8C3A_092 NA | |
| IL_6HCJ_247 | 1/51/3710:3721, 1/51/3733:3741 | No text annotation | ||
| IL_6HCJ_248 | 1/51/3721:3722, 1/51/3731:3733 | Single stack bend | geometric IL_8C3A_012 NA | |
| IL_6HCJ_322 | 1/51/3894:3898, 1/51/4563:4566 | No text annotation | ||
| IL_6HCJ_090 | 1/51/3895:3898, 1/51/4563:4565 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_6HCJ_091 | 1/51/3900:3902, 1/51/4558:4561 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6HCJ_092 | 1/51/3916:3918, 1/51/4383:4387 | No text annotation | ||
| IL_6HCJ_093 | 1/51/3927:3929, 1/51/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6HCJ_323 | 1/51/3927:3932, 1/51/4178:4184 | No text annotation | ||
| IL_6HCJ_324 | 1/51/3941:3943, 1/51/4071:4072 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6HCJ_251 | 1/51/3943:3952, 1/51/4060:4071 | No text annotation | ||
| IL_6HCJ_097 | 1/51/4082:4088, 1/51/4161:4164 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_6HCJ_325 | 1/51/4091:4130, 1/51/4154:4158 | No text annotation | ||
| IL_6HCJ_099 | 1/51/4191:4192, 1/51/4202:4204 | Single bulged A | geometric IL_4V9F_079 IL_14190.1 | |
| IL_6HCJ_100 | 1/51/4291:4294, 1/51/4316:4318 | Isolated non-canonical cWW pair | geometric IL_4V88_455 NA | |
| IL_6HCJ_254 | 1/51/4291:4297, 1/51/4314:4318 | No text annotation | ||
| IL_6HCJ_101 | 1/51/4295:4297, 1/51/4314:4315 | Single stack bend | geometric IL_5J7L_044 NA | |
| IL_6HCJ_102 | 1/51/4297:4298, 1/51/4312:4314 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6HCJ_103 | 1/51/4347:4351, 1/51/4363:4365 | No text annotation | geometric IL_8C3A_419 NA | |
| IL_6HCJ_104 | 1/51/4400:4408, 1/51/4434:4444 | No text annotation | ||
| IL_6HCJ_105 | 1/51/4412:4416, 1/51/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6HCJ_106 | 1/51/4453:4455, 1/51/4525:4528 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_68118.1 | |
| IL_6HCJ_107 | 1/51/4456:4458, 1/51/4520:4524 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_6HCJ_108 | 1/51/4458:4459, 1/51/4517:4520 | Multiple bulged bases | homologous IL_5TBW_109 NA | |
| IL_6HCJ_326 | 1/51/4462:4466, 1/51/4491:4514 | No text annotation | ||
| IL_6HCJ_109 | 1/51/4466:4470, 1/51/4485:4491 | No text annotation | ||
| IL_6HCJ_110 | 1/51/4495:4497, 1/51/4503:4505 | Isolated non-canonical cWW pair | homologous IL_5TBW_112 NA | |
| IL_6HCJ_327 | 1/51/4536:4538, 1/51/4547:4550 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_01003.1 | |
| IL_6HCJ_111 | 1/51/4537:4538, 1/51/4547:4549 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_6HCJ_112 | 1/51/4580:4582, 1/51/4721:4723 | Isolated cWH basepair | geometric IL_4E5C_001 NA | |
| IL_6HCJ_113 | 1/51/4582:4585, 1/51/4717:4721 | Double sheared | geometric IL_4XWF_001 IL_58355.1 | |
| IL_6HCJ_328 | 1/51/4594:4603, 1/51/4608:4616 | No text annotation | ||
| IL_6HCJ_115 | 1/51/4596:4603, 1/51/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_116 NA | |
| IL_6HCJ_329 | 1/51/4624:4629, 1/51/4669:4673 | No text annotation | ||
| IL_6HCJ_117 | 1/51/4632:4637, 1/51/4662:4666 | UAA/GAN related | geometric IL_5TBW_118 NA | |
| IL_6HCJ_330 | 1/51/4632:4640, 1/51/4659:4666 | No text annotation | ||
| IL_6HCJ_118 | 1/51/4637:4641, 1/51/4658:4662 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6HCJ_331 | 1/51/4641:4642, 1/51/4655:4658 | No text annotation | homologous IL_8CRE_128 NA | |
| IL_6HCJ_120 | 1/51/4679:4685, 1/51/4705:4711 | No text annotation | ||
| IL_6HCJ_122 | 1/51/4756:4766, 1/51/4868:4877 | No text annotation | ||
| IL_6HCJ_125 | 1/51/4890:4896, 1/51/4924:4929 | No text annotation | ||
| IL_6HCJ_335 | 1/51/4970:4994, 1/51/5057:5063 | No text annotation | ||
| IL_6HCJ_127 | 1/51/4992:4996, 1/51/5055:5059 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6HCJ_269 | 1/51/4999:5009, 1/51/5039:5051 | No text annotation | ||
| IL_6HCJ_129 | 1/51/5012:5017, 1/51/5032:5036 | No text annotation | ||
| IL_6HCJ_336 | 1/51/5012:5020, 1/51/5029:5036 | No text annotation | ||
| IL_6HCJ_130 | 1/71/15:17, 1/71/61:64 | Isolated non-canonical cWW pair | geometric IL_7A0S_026 IL_01003.1 | |
| IL_6HCJ_131 | 1/71/19:27, 1/71/52:59 | No text annotation | ||
| IL_6HCJ_337 | 1/71/20:30, 1/71/47:58 | No text annotation | ||
| IL_6HCJ_132 | 1/71/27:30, 1/71/47:52 | No text annotation | ||
| IL_6HCJ_133 | 1/71/71:78, 1/71/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6HCJ_134 | 1/71/78:82, 1/71/94:98 | Other IL | geometric IL_4WF9_084 NA | |
| IL_6HCJ_135 | 1/71/82:85, 1/71/92:94 | Isolated non-canonical cWW pair | geometric IL_5TBW_378 NA | |
| IL_6HCJ_136 | 1/A2/23:25, 1/A2/649:651 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 NA | |
| IL_6HCJ_138 | 1/A2/37:40, 1/A2/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.1 | |
| IL_6HCJ_139 | 1/A2/41:47, 1/A2/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_6HCJ_140 | 1/A2/49:52, 1/A2/475:477 | No text annotation | geometric IL_4P3T_002 NA | |
| IL_6HCJ_142 | 1/A2/108:115, 1/A2/348:353 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_6HCJ_143 | 1/A2/116:121, 1/A2/343:347 | No text annotation | homologous IL_4V88_393 NA | |
| IL_6HCJ_338 | 1/A2/216:221, 1/A2/300:309 | No text annotation | ||
| IL_6HCJ_149 | 1/A2/358:364, 1/A2/396:404 | No text annotation | ||
| IL_6HCJ_339 | 1/A2/366:371, 1/A2/393:394 | No text annotation | homologous IL_8P9A_392 IL_01372.1 | |
| IL_6HCJ_151 | 1/A2/411:413, 1/A2/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6HCJ_152 | 1/A2/437:439, 1/A2/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6HCJ_153 | 1/A2/459:461, 1/A2/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_6HCJ_340 | 1/A2/487:489, 1/A2/511:512 | Single bulged U | geometric IL_8P9A_396 IL_97561.1 | |
| IL_6HCJ_154 | 1/A2/491:496, 1/A2/506:509 | C-loop with extra cWW pair | homologous IL_4V88_408 NA | |
| IL_6HCJ_278 | 1/A2/491:498, 1/A2/504:509 | No text annotation | ||
| IL_6HCJ_156 | 1/A2/599:608, 1/A2/635:637 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_6HCJ_342 | 1/A2/611:617, 1/A2/624:632 | No text annotation | homologous IL_8CRE_423 IL_52042.1 | |
| IL_6HCJ_158 | 1/A2/663:665, 1/A2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
| IL_6HCJ_159 | 1/A2/673:675, 1/A2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6HCJ_343 | 1/A2/673:680, 1/A2/1025:1032 | No text annotation | ||
| IL_6HCJ_160 | 1/A2/676:681, 1/A2/1024:1029 | No text annotation | geometric IL_8ZA4_001 NA | |
| IL_6HCJ_162 | 1/A2/802:803, 1/A2/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_6HCJ_163 | 1/A2/805:807, 1/A2/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6HCJ_164 | 1/A2/877:879, 1/A2/907:909 | Isolated non-canonical cWW pair | geometric IL_4LFB_006 IL_01003.1 | |
| IL_6HCJ_166 | 1/A2/922:923, 1/A2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_6HCJ_167 | 1/A2/924:927, 1/A2/1014:1018 | Tandem non-canonical cWW pairs | geometric IL_4V88_429 NA | |
| IL_6HCJ_344 | 1/A2/924:935, 1/A2/1007:1018 | No text annotation | ||
| IL_6HCJ_168 | 1/A2/927:931, 1/A2/1010:1014 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6HCJ_169 | 1/A2/931:935, 1/A2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_6HCJ_345 | 1/A2/938:945, 1/A2/981:1004 | No text annotation | ||
| IL_6HCJ_170 | 1/A2/941:947, 1/A2/979:985 | No text annotation | ||
| IL_6HCJ_346 | 1/A2/950:956, 1/A2/967:976 | No text annotation | homologous IL_8P9A_422 IL_57741.1 | |
| IL_6HCJ_171 | 1/A2/952:956, 1/A2/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_6HCJ_172 | 1/A2/1041:1047, 1/A2/1071:1074 | No text annotation | ||
| IL_6HCJ_173 | 1/A2/1047:1051, 1/A2/1067:1071 | tSH-tHW-tHS | geometric IL_6CZR_145 NA | |
| IL_6HCJ_347 | 1/A2/1091:1096, 1/A2/1136:1158 | No text annotation | ||
| IL_6HCJ_174 | 1/A2/1098:1103, 1/A2/1129:1134 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_6HCJ_349 | 1/A2/1168:1175, 1/A2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8CRE_442 IL_84044.1 | |
| IL_6HCJ_177 | 1/A2/1203:1206, 1/A2/1692:1696 | No text annotation | ||
| IL_6HCJ_178 | 1/A2/1206:1212, 1/A2/1687:1692 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_6HCJ_180 | 1/A2/1230:1235, 1/A2/1523:1528 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_6HCJ_288 | 1/A2/1230:1236, 1/A2/1521:1528 | No text annotation | ||
| IL_6HCJ_181 | 1/A2/1235:1236, 1/A2/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6HCJ_184 | 1/A2/1325:1327, 1/A2/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6HCJ_185 | 1/A2/1328:1335, 1/A2/1492:1501 | No text annotation | ||
| IL_6HCJ_186 | 1/A2/1335:1339, 1/A2/1487:1492 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6HCJ_187 | 1/A2/1345:1349, 1/A2/1380:1384 | No text annotation | ||
| IL_6HCJ_188 | 1/A2/1363:1365, 1/A2/1374:1375 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_6HCJ_192 | 1/A2/1536:1539, 1/A2/1594:1597 | No text annotation | ||
| IL_6HCJ_195 | 1/A2/1700:1702, 1/A2/1833:1836 | No text annotation | homologous IL_4V88_463 NA | |
| IL_6HCJ_196 | 1/A2/1702:1705, 1/A2/1829:1833 | No text annotation | homologous IL_8P9A_453 IL_25873.1 | |
| IL_6HCJ_350 | 1/A2/1706:1711, 1/A2/1822:1828 | No text annotation | ||
| IL_6HCJ_198 | 1/A2/1713:1717, 1/A2/1817:1820 | No text annotation | ||
| IL_6HCJ_292 | 1/A2/1714:1722, 1/A2/1812:1819 | No text annotation | ||
| IL_6HCJ_199 | 1/A2/1717:1722, 1/A2/1812:1817 | No text annotation | ||
| IL_6HCJ_351 | 1/A2/1729:1733, 1/A2/1801:1805 | No text annotation | ||
| IL_6HCJ_201 | 1/A2/1733:1736, 1/A2/1798:1801 | Double sheared | geometric IL_3D0U_002 IL_58355.1 | |
| IL_6HCJ_206 | 1/A2/1840:1841, 1/A2/1858:1860 | Single stack bend | geometric IL_5TBW_070 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6HCJ_208 | No text annotation | ||
| IL_6HCJ_004 | Stack outside cWW | ||
| IL_6HCJ_209 | No text annotation | ||
| IL_6HCJ_210 | No text annotation | ||
| IL_6HCJ_006 | Isolated non-canonical cWW pair | ||
| IL_6HCJ_009 | Other IL | ||
| IL_6HCJ_010 | No text annotation | ||
| IL_6HCJ_211 | No text annotation | ||
| IL_6HCJ_011 | No text annotation | ||
| IL_6HCJ_212 | Tandem non-canonical cWW pairs | ||
| IL_6HCJ_013 | Isolated non-canonical cWW pair | ||
| IL_6HCJ_213 | No text annotation | ||
| IL_6HCJ_214 | No text annotation | ||
| IL_6HCJ_215 | Partly complementary | ||
| IL_6HCJ_301 | No text annotation | ||
| IL_6HCJ_020 | Isolated non-canonical cWW pair | ||
| IL_6HCJ_216 | Tandem non-canonical cWW pairs | ||
| IL_6HCJ_021 | Isolated non-canonical cWW pair | ||
| IL_6HCJ_217 | No text annotation | ||
| IL_6HCJ_218 | Single stack bend | ||
| IL_6HCJ_302 | Single stack bend | ||
| IL_6HCJ_219 | No text annotation | ||
| IL_6HCJ_022 | Other IL | ||
| IL_6HCJ_220 | No text annotation | ||
| IL_6HCJ_023 | Multiple bulged bases | ||
| IL_6HCJ_024 | Single bulged U | ||
| IL_6HCJ_221 | No text annotation | ||
| IL_6HCJ_025 | No text annotation | ||
| IL_6HCJ_222 | No text annotation | ||
| IL_6HCJ_223 | No text annotation | ||
| IL_6HCJ_224 | No text annotation | ||
| IL_6HCJ_032 | No text annotation | ||
| IL_6HCJ_225 | No text annotation | ||
| IL_6HCJ_034 | No text annotation | ||
| IL_6HCJ_226 | No text annotation | ||
| IL_6HCJ_036 | Single stack bend | ||
| IL_6HCJ_228 | No text annotation | ||
| IL_6HCJ_310 | No text annotation | ||
| IL_6HCJ_053 | Tandem non-canonical cWW pairs | ||
| IL_6HCJ_230 | Partly complementary | ||
| IL_6HCJ_231 | No text annotation | ||
| IL_6HCJ_057 | No text annotation | ||
| IL_6HCJ_059 | Isolated cWS basepair | ||
| IL_6HCJ_232 | No text annotation | ||
| IL_6HCJ_065 | Isolated non-canonical cWW with bulges | ||
| IL_6HCJ_234 | Tandem non-canonical cWW pairs | ||
| IL_6HCJ_235 | No text annotation | ||
| IL_6HCJ_066 | Major groove platform with extra cWW | ||
| IL_6HCJ_237 | No text annotation | ||
| IL_6HCJ_072 | No text annotation | ||
| IL_6HCJ_238 | No text annotation | ||
| IL_6HCJ_239 | No text annotation | ||
| IL_6HCJ_074 | No text annotation | ||
| IL_6HCJ_240 | Tandem non-canonical cWW pairs | ||
| IL_6HCJ_242 | No text annotation | ||
| IL_6HCJ_244 | No text annotation | ||
| IL_6HCJ_246 | No text annotation | ||
| IL_6HCJ_089 | No text annotation | ||
| IL_6HCJ_249 | No text annotation | ||
| IL_6HCJ_250 | No text annotation | ||
| IL_6HCJ_094 | No text annotation | ||
| IL_6HCJ_095 | No text annotation | ||
| IL_6HCJ_252 | No text annotation | ||
| IL_6HCJ_096 | No text annotation | ||
| IL_6HCJ_253 | No text annotation | ||
| IL_6HCJ_098 | No text annotation | ||
| IL_6HCJ_255 | No text annotation | ||
| IL_6HCJ_256 | No text annotation | ||
| IL_6HCJ_257 | No text annotation | ||
| IL_6HCJ_258 | Partly complementary | ||
| IL_6HCJ_114 | Isolated non-canonical cWW pair | ||
| IL_6HCJ_259 | No text annotation | ||
| IL_6HCJ_116 | No text annotation | ||
| IL_6HCJ_260 | No text annotation | ||
| IL_6HCJ_119 | Isolated non-canonical cWW pair | ||
| IL_6HCJ_261 | No text annotation | ||
| IL_6HCJ_262 | No text annotation | ||
| IL_6HCJ_121 | No text annotation | ||
| IL_6HCJ_332 | No text annotation | ||
| IL_6HCJ_263 | No text annotation | ||
| IL_6HCJ_123 | Tandem non-canonical cWW pairs | ||
| IL_6HCJ_333 | No text annotation | ||
| IL_6HCJ_264 | No text annotation | ||
| IL_6HCJ_124 | No text annotation | ||
| IL_6HCJ_265 | Tandem non-canonical cWW pairs | ||
| IL_6HCJ_334 | No text annotation | ||
| IL_6HCJ_266 | No text annotation | ||
| IL_6HCJ_126 | No text annotation | ||
| IL_6HCJ_267 | No text annotation | ||
| IL_6HCJ_128 | Single bulged G, near cWW | ||
| IL_6HCJ_268 | Tandem non-canonical cWW pairs | ||
| IL_6HCJ_270 | No text annotation | ||
| IL_6HCJ_271 | No text annotation | ||
| IL_6HCJ_272 | Partly complementary | ||
| IL_6HCJ_137 | Isolated non-canonical cWW pair | ||
| IL_6HCJ_141 | No text annotation | ||
| IL_6HCJ_273 | No text annotation | ||
| IL_6HCJ_274 | Single stack bend | ||
| IL_6HCJ_144 | No text annotation | ||
| IL_6HCJ_275 | No text annotation | ||
| IL_6HCJ_145 | No text annotation | ||
| IL_6HCJ_276 | No text annotation | ||
| IL_6HCJ_146 | No text annotation | ||
| IL_6HCJ_147 | No text annotation | ||
| IL_6HCJ_148 | No text annotation | ||
| IL_6HCJ_150 | No text annotation | ||
| IL_6HCJ_277 | No text annotation | ||
| IL_6HCJ_341 | No text annotation | ||
| IL_6HCJ_279 | No text annotation | ||
| IL_6HCJ_155 | No text annotation | ||
| IL_6HCJ_280 | No text annotation | ||
| IL_6HCJ_157 | No text annotation | ||
| IL_6HCJ_281 | No text annotation | ||
| IL_6HCJ_161 | No text annotation | ||
| IL_6HCJ_165 | No text annotation | ||
| IL_6HCJ_282 | No text annotation | ||
| IL_6HCJ_283 | No text annotation | ||
| IL_6HCJ_284 | No text annotation | ||
| IL_6HCJ_285 | No text annotation | ||
| IL_6HCJ_286 | No text annotation | ||
| IL_6HCJ_175 | No text annotation | ||
| IL_6HCJ_348 | Minor groove platform | ||
| IL_6HCJ_176 | No text annotation | ||
| IL_6HCJ_287 | No text annotation | ||
| IL_6HCJ_179 | C-loop | ||
| IL_6HCJ_182 | No text annotation | ||
| IL_6HCJ_183 | No text annotation | ||
| IL_6HCJ_189 | Tandem non-canonical cWW pairs | ||
| IL_6HCJ_190 | No text annotation | ||
| IL_6HCJ_191 | No text annotation | ||
| IL_6HCJ_289 | No text annotation | ||
| IL_6HCJ_193 | 180 degree turn | ||
| IL_6HCJ_194 | Isolated non-canonical cWW pair | ||
| IL_6HCJ_290 | Tandem non-canonical cWW pairs | ||
| IL_6HCJ_197 | No text annotation | ||
| IL_6HCJ_291 | No text annotation | ||
| IL_6HCJ_293 | No text annotation | ||
| IL_6HCJ_200 | No text annotation | ||
| IL_6HCJ_202 | No text annotation | ||
| IL_6HCJ_352 | Partly complementary | ||
| IL_6HCJ_294 | No text annotation | ||
| IL_6HCJ_203 | Triple sheared | ||
| IL_6HCJ_204 | No text annotation | ||
| IL_6HCJ_295 | No text annotation | ||
| IL_6HCJ_205 | Other IL | ||
| IL_6HCJ_296 | No text annotation | ||
| IL_6HCJ_207 | No text annotation | ||
| IL_6HCJ_353 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6HCJ_001 | 1/51/112:116, 1/51/155:160, 1/51/275:278 | No text annotation | ||
| J3_6HCJ_042 | 1/51/196:201, 1/51/214:228, 1/51/240:244 | No text annotation | ||
| J3_6HCJ_026 | 1/51/380:390, 1/51/401:421, 1/81/13:20 | No text annotation | ||
| J3_6HCJ_002 | 1/51/982:984, 1/51/1070:1074, 1/51/1236:1273 | No text annotation | ||
| J3_6HCJ_003 | 1/51/1530:1537, 1/51/1622:1624, 1/51/1640:1644 | No text annotation | ||
| J3_6HCJ_044 | 1/51/1531:1537, 1/51/1622:1626, 1/51/1636:1643 | No text annotation | ||
| J3_6HCJ_004 | 1/51/1545:1548, 1/51/1580:1585, 1/51/1608:1614 | No text annotation | ||
| J3_6HCJ_029 | 1/51/1726:1751, 1/51/1779:1806, 1/51/1832:1837 | No text annotation | ||
| J3_6HCJ_005 | 1/51/2393:2399, 1/51/2805:2809, 1/51/2817:2822 | No text annotation | ||
| J3_6HCJ_006 | 1/51/2402:2405, 1/51/2785:2791, 1/51/2800:2802 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_6HCJ_045 | 1/51/2406:2412, 1/51/2432:2441, 1/51/2781:2784 | No text annotation | ||
| J3_6HCJ_031 | 1/51/2443:2445, 1/51/2515:2539, 1/51/2777:2779 | No text annotation | ||
| J3_6HCJ_046 | 1/51/2446:2456, 1/51/2465:2479, 1/51/2499:2514 | No text annotation | ||
| J3_6HCJ_007 | 1/51/2844:2855, 1/51/3837:3839, 1/51/3843:3844 | No text annotation | ||
| J3_6HCJ_008 | 1/51/3634:3655, 1/51/3689:3695, 1/51/3820:3826 | No text annotation | ||
| J3_6HCJ_009 | 1/51/3937:3939, 1/51/4074:4078, 1/51/4168:4173 | Kink-turn 3-way junction | geometric J3_5J7L_044 NA | |
| J3_6HCJ_033 | 1/51/3937:3939, 1/51/4074:4088, 1/51/4161:4173 | No text annotation | ||
| J3_6HCJ_034 | 1/51/4231:4238, 1/51/4286:4291, 1/51/4318:4330 | No text annotation | ||
| J3_6HCJ_047 | 1/51/4239:4248, 1/51/4260:4269, 1/51/4278:4285 | No text annotation | ||
| J3_6HCJ_010 | 1/51/4241:4245, 1/51/4263:4269, 1/51/4278:4283 | No text annotation | ||
| J3_6HCJ_011 | 1/51/4462:4466, 1/51/4491:4493, 1/51/4507:4514 | No text annotation | ||
| J3_6HCJ_048 | 1/51/4587:4592, 1/51/4618:4621, 1/51/4676:4715 | No text annotation | ||
| J3_6HCJ_049 | 1/51/4749:4754, 1/51/4879:4883, 1/51/4936:4951 | No text annotation | ||
| J3_6HCJ_012 | 1/51/4970:4975, 1/51/4983:4992, 1/51/5059:5063 | No text annotation | ||
| J3_6HCJ_013 | 1/71/8:14, 1/71/65:67, 1/71/108:111 | No text annotation | ||
| J3_6HCJ_014 | 1/A2/40:41, 1/A2/481:489, 1/A2/511:514 | No text annotation | ||
| J3_6HCJ_015 | 1/A2/682:685, 1/A2/917:922, 1/A2/1022:1023 | No text annotation | ||
| J3_6HCJ_050 | 1/A2/682:685, 1/A2/917:923, 1/A2/1019:1023 | No text annotation | ||
| J3_6HCJ_016 | 1/A2/938:941, 1/A2/985:994, 1/A2/999:1004 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_6HCJ_017 | 1/A2/1091:1096, 1/A2/1136:1140, 1/A2/1147:1158 | No text annotation | ||
| J3_6HCJ_051 | 1/A2/1209:1221, 1/A2/1645:1651, 1/A2/1673:1690 | No text annotation | ||
| J3_6HCJ_018 | 1/A2/1218:1221, 1/A2/1645:1651, 1/A2/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
| J3_6HCJ_019 | 1/A2/1225:1228, 1/A2/1530:1532, 1/A2/1638:1641 | No text annotation | homologous J3_4V88_036 NA | |
| J3_6HCJ_052 | 1/A2/1225:1230, 1/A2/1528:1536, 1/A2/1597:1641 | No text annotation | ||
| J3_6HCJ_053 | 1/A2/1236:1244, 1/A2/1255:1269, 1/A2/1513:1521 | No text annotation | ||
| J3_6HCJ_020 | 1/A2/1237:1245, 1/A2/1254:1266, 1/A2/1516:1520 | No text annotation | ||
| J3_6HCJ_022 | 1/A2/1339:1345, 1/A2/1384:1390, 1/A2/1480:1487 | No text annotation | ||
| J3_6HCJ_023 | 1/A2/1350:1351, 1/A2/1360:1363, 1/A2/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_6HCJ_024 | 1/A2/1391:1395, 1/A2/1450:1456, 1/A2/1470:1479 | No text annotation | ||
| J4_6HCJ_001 | 1/33/7:10, 1/33/24:26, 1/33/42:48, 1/33/64:65 | tRNA junction | homologous J4_8VU0_001 J4_58311.1 | |
| J4_6HCJ_012 | 1/51/111:116, 1/51/155:160, 1/51/275:283, 1/51/304:330 | No text annotation | ||
| J4_6HCJ_013 | 1/51/1347:1355, 1/51/1384:1399, 1/51/1418:1472, 1/51/1493:1509 | No text annotation | ||
| J4_6HCJ_014 | 1/51/2365:2371, 1/51/2389:2391, 1/51/2824:2829, 1/51/3856:3857 | No text annotation | ||
| J4_6HCJ_015 | 1/51/2393:2405, 1/51/2785:2791, 1/51/2800:2807, 1/51/2819:2822 | No text annotation | ||
| J4_6HCJ_016 | 1/51/2549:2555, 1/51/2572:2576, 1/51/2585:2593, 1/51/2752:2770 | No text annotation | ||
| J4_6HCJ_017 | 1/51/2618:2620, 1/51/2636:2648, 1/51/2685:2702, 1/51/2714:2719 | No text annotation | ||
| J4_6HCJ_018 | 1/51/2855:2863, 1/51/2887:2888, 1/51/3613:3626, 1/51/3835:3837 | No text annotation | ||
| J4_6HCJ_019 | 1/51/3632:3655, 1/51/3689:3710, 1/51/3741:3792, 1/51/3808:3829 | No text annotation | ||
| J4_6HCJ_020 | 1/A2/30:36, 1/A2/519:527, 1/A2/558:595, 1/A2/641:644 | No text annotation | ||
| J4_6HCJ_010 | 1/A2/30:36, 1/A2/519:527, 1/A2/558:598, 1/A2/638:644 | No text annotation | ||
| J4_6HCJ_011 | 1/q3/6:10, 1/q3/25:28, 1/q3/42:49, 1/q3/65:68 | No text annotation | ||
| J5_6HCJ_003 | 1/51/1335:1340, 1/51/1516:1522, 1/51/1655:1662, 1/51/2287:2292, 1/51/2342:2351 | No text annotation | ||
| J5_6HCJ_004 | 1/A2/30:36, 1/A2/519:527, 1/A2/558:563, 1/A2/592:595, 1/A2/641:644 | No text annotation | ||
| J6_6HCJ_002 | 1/51/451:455, 1/51/701:713, 1/51/955:962, 1/51/970:984, 1/51/1070:1074, 1/51/1236:1296 | No text annotation | ||
| J6_6HCJ_003 | 1/A2/1085:1089, 1/A2/1160:1166, 1/A2/1193:1208, 1/A2/1691:1702, 1/A2/1833:1840, 1/A2/1860:1861 | No text annotation | ||
| J7_6HCJ_003 | 1/51/1666:1673, 1/51/1682:1686, 1/51/1851:1855, 1/51/1879:1884, 1/51/1895:1900, 1/51/2076:2085, 1/51/2272:2283 | No text annotation | ||
| J7_6HCJ_002 | 1/A2/1085:1089, 1/A2/1160:1166, 1/A2/1193:1221, 1/A2/1645:1651, 1/A2/1673:1702, 1/A2/1833:1840, 1/A2/1860:1861 | No text annotation | ||
| J8_6HCJ_003 | 1/51/3900:3923, 1/51/4188:4191, 1/51/4204:4230, 1/51/4331:4342, 1/51/4370:4400, 1/51/4444:4455, 1/51/4525:4534, 1/51/4552:4561 | No text annotation | ||
| J8_6HCJ_004 | 1/A2/40:62, 1/A2/86:106, 1/A2/355:365, 1/A2/395:413, 1/A2/424:436, 1/A2/457:461, 1/A2/468:487, 1/A2/512:514 | No text annotation | ||
| J9_6HCJ_002 | 1/51/19:27, 1/51/55:67, 1/51/74:78, 1/51/105:109, 1/51/332:342, 1/81/32:42, 1/81/101:106, 1/81/113:114, 1/81/136:138 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6HCJ_025 | No text annotation | ||
| J3_6HCJ_027 | No text annotation | ||
| J3_6HCJ_043 | No text annotation | ||
| J3_6HCJ_028 | No text annotation | ||
| J3_6HCJ_030 | No text annotation | ||
| J3_6HCJ_032 | No text annotation | ||
| J3_6HCJ_035 | No text annotation | ||
| J3_6HCJ_036 | No text annotation | ||
| J3_6HCJ_037 | No text annotation | ||
| J3_6HCJ_038 | No text annotation | ||
| J3_6HCJ_039 | No text annotation | ||
| J3_6HCJ_040 | No text annotation | ||
| J3_6HCJ_021 | No text annotation | ||
| J3_6HCJ_041 | No text annotation | ||
| J4_6HCJ_002 | No text annotation | ||
| J4_6HCJ_003 | No text annotation | ||
| J4_6HCJ_004 | No text annotation | ||
| J4_6HCJ_005 | No text annotation | ||
| J4_6HCJ_006 | No text annotation | ||
| J4_6HCJ_007 | No text annotation | ||
| J4_6HCJ_008 | No text annotation | ||
| J4_6HCJ_009 | No text annotation | ||
| J5_6HCJ_001 | No text annotation | ||
| J5_6HCJ_002 | No text annotation | ||
| J6_6HCJ_001 | No text annotation | ||
| J7_6HCJ_001 | No text annotation | ||
| J8_6HCJ_001 | No text annotation | ||
| J8_6HCJ_002 | No text annotation | ||
| J9_6HCJ_001 | No text annotation |
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