HL_6HCJ_003

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_003 not in the Motif Atlas

Homologous match to HL_6CFJ_108

Geometric discrepancy: 0.2311

The information below is about HL_6CFJ_108

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6HCJ|1|33|G|52
6HCJ|1|33|A|53
6HCJ|1|33|U|54
6HCJ|1|33|C|55
6HCJ|1|33|G|56
6HCJ|1|33|A|57
6HCJ|1|33|A|58
6HCJ|1|33|A|59
6HCJ|1|33|C|60

Current chains

Chain 33

P/E tRNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain w3

uL1