HL_6HCJ_012
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 6HCJ|1|51|G|315, 6HCJ|1|51|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCJ_012 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.2736
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6HCJ|1|51|G|314
6HCJ|1|51|G|315
6HCJ|1|51|U|316
6HCJ|1|51|A|317
6HCJ|1|51|A|318
6HCJ|1|51|A|319
6HCJ|1|51|C|320
6HCJ|1|51|U|321
6HCJ|1|51|C|322
6HCJ|1|51|C|323
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain a3
- uL15
- Chain i3
- 60S ribosomal protein L36
- Chain o3
- eL42
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