HL_6HCJ_020

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCUUGAAACAC

Length

12 nucleotides

Bulged bases

6HCJ|1|51|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_020 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3917

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6HCJ|1|51|G|1316
6HCJ|1|51|U|1317
6HCJ|1|51|C|1318
6HCJ|1|51|U|1319
6HCJ|1|51|U|1320
6HCJ|1|51|G|1321
6HCJ|1|51|A|1322
6HCJ|1|51|A|1323
6HCJ|1|51|A|1324
6HCJ|1|51|C|1325
6HCJ|1|51|A|1326
6HCJ|1|51|C|1327

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain a3

uL15

Chain e3

eL32