HL_6HCJ_023

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAGGCCUUCCAGUCCGCCGAG

Length

22 nucleotides

Bulged bases

6HCJ|1|51|C|1437, 6HCJ|1|51|U|1438, 6HCJ|1|51|C|1442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|1431
6HCJ|1|51|G|1432
6HCJ|1|51|A|1433
6HCJ|1|51|G|1434
6HCJ|1|51|G|1435
6HCJ|1|51|C|1436
6HCJ|1|51|C|1437
6HCJ|1|51|U|1438
6HCJ|1|51|U|1440
6HCJ|1|51|C|1441
6HCJ|1|51|C|1442
6HCJ|1|51|A|1443
6HCJ|1|51|G|1444
6HCJ|1|51|U|1445
6HCJ|1|51|C|1446
6HCJ|1|51|C|1447
6HCJ|1|51|G|1448
6HCJ|1|51|C|1449
6HCJ|1|51|C|1450
6HCJ|1|51|G|1451
6HCJ|1|51|A|1452
6HCJ|1|51|G|1453

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain F3

uL30

Chain Q3

eL18

Chain b3

eL29