HL_6HCJ_029

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGCCGAAACGAUC

Length

13 nucleotides

Bulged bases

6HCJ|1|51|C|1768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_029 not in the Motif Atlas

Geometric match to HL_7UQ6_001

Geometric discrepancy: 0.2521

The information below is about HL_7UQ6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6HCJ|1|51|G|1760
6HCJ|1|51|G|1761
6HCJ|1|51|C|1762
6HCJ|1|51|C|1763
6HCJ|1|51|G|1764
6HCJ|1|51|A|1765
6HCJ|1|51|A|1766
6HCJ|1|51|A|1767
6HCJ|1|51|C|1768
6HCJ|1|51|G|1769
6HCJ|1|51|A|1770
6HCJ|1|51|U|1771
6HCJ|1|51|C|1772

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain Q2

uS19