HL_6HCJ_034
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG
- Length
- 40 nucleotides
- Bulged bases
- 6HCJ|1|51|C|2094, 6HCJ|1|51|G|2100, 6HCJ|1|51|A|2101, 6HCJ|1|51|G|2112, 6HCJ|1|51|G|2113, 6HCJ|1|51|U|2267, 6HCJ|1|51|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|51|C|2087
6HCJ|1|51|A|2088
6HCJ|1|51|G|2089
6HCJ|1|51|U|2090
6HCJ|1|51|C|2091
6HCJ|1|51|G|2092
6HCJ|1|51|G|2093
6HCJ|1|51|C|2094
6HCJ|1|51|A|2095
6HCJ|1|51|G|2096
6HCJ|1|51|A|2097
6HCJ|1|51|G|2098
6HCJ|1|51|C|2099
6HCJ|1|51|G|2100
6HCJ|1|51|A|2101
6HCJ|1|51|G|2102
6HCJ|1|51|A|2103
6HCJ|1|51|A|2104
6HCJ|1|51|A|2105
6HCJ|1|51|G|2106
6HCJ|1|51|A|2107
6HCJ|1|51|G|2108
6HCJ|1|51|A|2109
6HCJ|1|51|G|2110
6HCJ|1|51|U|2111
6HCJ|1|51|G|2112
6HCJ|1|51|G|2113
6HCJ|1|51|C|2258
6HCJ|1|51|G|2259
6HCJ|1|51|C|2260
6HCJ|1|51|G|2261
6HCJ|1|51|G|2262
6HCJ|1|51|A|2263
6HCJ|1|51|C|2264
6HCJ|1|51|G|2265
6HCJ|1|51|C|2266
6HCJ|1|51|U|2267
6HCJ|1|51|A|2268
6HCJ|1|51|C|2269
6HCJ|1|51|G|2270
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain C3
- uL4
- Chain E3
- 60S ribosomal protein L6
- Chain F3
- uL30
- Chain Q3
- eL18
- Chain b3
- eL29
- Chain e3
- eL32
- Chain r3
- eL28
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