HL_6HCJ_035

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_035 not in the Motif Atlas

Homologous match to HL_5TBW_030

Geometric discrepancy: 0.1683

The information below is about HL_5TBW_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6HCJ|1|51|C|2317
6HCJ|1|51|G|2318
6HCJ|1|51|C|2319
6HCJ|1|51|G|2320
6HCJ|1|51|G|2321
6HCJ|1|51|G|2322

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain e3

eL32

Chain r3

eL28